Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02544 ATGGAGCACTTCAACAACGACGATCTTGAGTACGTCGGCGACTACTACTACGACGACGTTTCTGATTTCCAAGACCACACCTCCGTCGACATTCTTCCTCAGCAACCCTCCCATGCCGATTCTCAAGACTCCGACTTTGACTTGGACGACGAAGATCTCCTAACCAGTAATGCAAAGACTGATACCACCGCTTCTGAAGCCAGAAACGGGAAAGACATCCAGGGAATCCCCTGGGAGAGGCTCAATTATAGTAGAGACAAGTACCGCGAGACTCGATTGAAGCAGTATAAAAATTACGAGAGTCTGTCCCGTTCACGCCACCACCTTCATAAGGAGTGCTTGAACGTGCAGAAGGGGAATACCTTCTATGACTTCTTCTTCAATACCAGGCTCGTCAAATCCACAATTGTGCATTTTCAGCTGAGGAACTTGTTGTGGGCAACTTCGAAGCATGATGTCTACCTTATGCAAAACTACTCTGTGATGCACTGGTCCGCAGTATTACGAAGGGCTAAAGAAGTGCTTAACGTAGCCAAACCAATTGTTCCAAGTCTTAAGCGTACTGGATTTTTGGCGCAGCCAGTCTCTAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGTGAGCTTATATGCAAGAATTTGAAGAAGCCTGGAGTTCTATTTTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGACGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGAAGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAACTATGATTGGTCTGTTAATGATATTTCGGTTAGCCCGGATGGGAAGTCGTTAGCTGTACTTGGGGACAGTACAGAGTGCTTGATAGCTGATGCTAACACTGGAAAGATTACTGGAAGCTTAAAAGGTCACTTGGACTACTCTTTTGCATCGGCGTGGCACCCAGATGGACGGATATTAGCTACTGGGAATCAGGACACAACTTGCAGGTTGTGGGACATAAGAAATCTTTCACAGTCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCTTAAGATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCTGCAGACTTTGTCCATGTTTATGACTCTCATTCTGGTTATGTAGAAGGTCAAGAGATAGATCTATTTGGTGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGCATTGCTGACAGAACCTATGGTAGCTTGTTAGAGTTCGTCAGAAAGCGTTACAATTATTACCTAGACTCCATTTTTTAA 1365 0.4476 MEHFNNDDLEYVGDYYYDDVSDFQDHTSVDILPQQPSHADSQDSDFDLDDEDLLTSNAKTDTTASEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYESLSRSRHHLHKECLNVQKGNTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSAVLRRAKEVLNVAKPIVPSLKRTGFLAQPVSRVQISTMTVKENLMVAGGFHGELICKNLKKPGVLFCGKITTDDNAITNAVDVYRNPAGSLRVITANNDSQVRVFEAENFASLGCFNYDWSVNDISVSPDGKSLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHVYDSHSGYVEGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFVRKRYNYYLDSIF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02544 454 FunFam WD-40 repeat family protein 235 451 - -
Vimu10g02544 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 357 - -
Vimu10g02544 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 363 IPR001680 GO:0005515
Vimu10g02544 454 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 451 - -
Vimu10g02544 454 ProSitePatterns Trp-Asp (WD) repeats signature. 341 355 IPR019775 -
Vimu10g02544 454 Gene3D - 244 444 IPR015943 GO:0005515
Vimu10g02544 454 SUPERFAMILY WD40 repeat-like 194 434 IPR036322 GO:0005515
Vimu10g02544 454 Pfam WD domain, G-beta repeat 317 354 IPR001680 GO:0005515
Vimu10g02544 454 SMART WD40_4 315 354 IPR001680 GO:0005515
Vimu10g02544 454 SMART WD40_4 274 312 IPR001680 GO:0005515
Vimu10g02544 454 SMART WD40_4 358 397 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02544 Vimu-Chr10 36758068 36762677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02544 240 434 Miscellaneous Gene Families AT5G08390 25.000 1.20e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02544 - - gmx:100775453 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02544 10 36758068 36762677 Vimu10g02544 10 36758068 36762677 ECH