Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02490 ATGTGTAATATTCAGAGGAACCAGCTCTCCTGCATTCATTTGAGGACTGGCAGGTGTGCGGTTCCCAATCTCACCGCTAAAGTGTTGAGATGGTTTATGAGAAGTGTGGTGATGAGTGAGATATTTTATACGGAAAAAGACGCATGTCCCAATAATGCAACACCGGACAGAATTCCACCCTCACGTTCTCGTCTCTATTCCCAAACTACCGTTCACGTGTCAGACATGAATTTTGCATTGCTTGCTTCATTGCCCCATTACTCTGCGGTTCAAAAGTCGCATCCCAATCCACACTTTTCGCTTCGGTGTTTTCCGCAAGAAACAACGCCGGCCGCTGTTCTTTCACCGGAAATTCGTCAGTCCGTGGCGCAAGAATTGTCATTTGGTTTTATTGTTAGGCCGGTGAGGTTTATGAAGCAAGCATCGGGAAGCATAACGAGCGATGAACATGGAGTTTTTAGCGAGACAATGGATCGTTCCAAACACAGGACACCTAATGCTTATGGCGGTCGTGCTCAAGAAGGGGTTCTTGAGGAAGAATCCTCCAAAGTAATAGAGAGCAGACCATCATGGAAAACTTTCCCAGGCCAGGCATTTCCATTGGGTGTATCAGAAGCTGACAGTGGCATCAATTTTTCTATTTTTTCACGACATGCAACTGCTGTCACACTTTGTTTGGTCCTTCCTGAGAGGGCAAGTATAGGCACATTGAATGGCGGCATGATAGAAATGGTATTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATTTGTATTGAGGATCTTCCTCGAAGCAATGTTCTATACGGATATCGCATAGATGGACCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGCAACATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGCCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGATTGGGGAGAAAATTACAAGCTTCCGAATATTCCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGTTTGGACAGCAACATTCGTGGTAGCTATCTCGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAATTGCTGCCCGTCTTTGAGTTTGATGAGTTGGAATTCCAGAGGCGGCAAAATCCCAGAGATCACATGATTAATACGTGGGGTTATTCTACAATAAATTTCTTTTCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCTCGAGAGTTCAAAGAGATGGTTAAAGCCTTACATTCTTCTGGTATAGAGGTTATTTTGGATGTGGTCTATAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACCTCATTCCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGACTTGTTGGGCTTTTTGGTCCTATGAGATTTTTGGGCCATGTCCCAATTGGATTAGGACGGATCCCTGTGGACTGGGCTAAATTTGATGTTGTATATGCATGTGTTGGCACTTGCTCTCCCTTGATGAATAGAAAATCAGCCGACCATGAATTTGAACAACTGTTCTTCTGTCCACAGCCCGAGGTACCTAATCCAATTTTCCTTTGGCCACCTGGTAAGTCTTCCTCGAGCCTCGGCTTACTTGTAAATTGGTCTAGGCCCAAGCTGGAGTCTGTTAATTTCAAAGCTAGGCATGTTTGGCTAAGCCCACTAAGCATGCAGGCAATTGCTAAAGATGCAGTCTTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTTTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTATGGTGTAAAGGGGAGCTTTGCTACTCGTGTTGCTGGATCTTCTGATCTTTACAGTGTGAACAAGCGAAGGCCATATCATAGTATTAACTTTGTTATTGCACACGACGGATTCACCTTGCGTGACCTTGTTTCATACAATTTGAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGATGGTAGCAATGATAATTTTAGTTGGAATTGTGGTTTCGAAGGTAGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGATCACGGCAAATGAAAAACTTTCACTTGGCACTAATGATATCTCAGGGTACACCAATGATGCTAATGGGAGATGAATATGGTCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACCGCCATAAATAATTTTTTGTGGGATCAGTTGGATGCCCGGAAGAGTGATCACTTCAGGTTTTTCTCGAAGGTGATAAAGTACAGGCATGCCCATGAAGTATTCAGTCATGAAAGTTTTCTCAGTAAGAATGAAATAACATGGCATGAAGACAATTGGGACAATCATGACAGCAGATTTCTTGCATTCACGCTTCATGAAAGGAGCGGGGCAGATGTCTATTTGGCATTTAATGCTCACGATTACTTTATCAAAGCTCTGCTGCCCACACCTCCAGAAAAGAGGAAGTGGTTCCGTGTGAAGTTGTATTGTGATGAAAACATGCCCAATGAAATACTGGATGCAAAACGTGAGTGTCCAAGCTCTAGGCTGAAAAGGGACAGGAACATACCCAAGGGTTGGGATTGGTATATTCAGGATTAG 2790 0.4283 MCNIQRNQLSCIHLRTGRCAVPNLTAKVLRWFMRSVVMSEIFYTEKDACPNNATPDRIPPSRSRLYSQTTVHVSDMNFALLASLPHYSAVQKSHPNPHFSLRCFPQETTPAAVLSPEIRQSVAQELSFGFIVRPVRFMKQASGSITSDEHGVFSETMDRSKHRTPNAYGGRAQEGVLEEESSKVIESRPSWKTFPGQAFPLGVSEADSGINFSIFSRHATAVTLCLVLPERASIGTLNGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSNIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNIPEKDLVIYEMNVRAFTIDESSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRQNPRDHMINTWGYSTINFFSPMSRYASAGGGSVNASREFKEMVKALHSSGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGLVGLFGPMRFLGHVPIGLGRIPVDWAKFDVVYACVGTCSPLMNRKSADHEFEQLFFCPQPEVPNPIFLWPPGKSSSSLGLLVNWSRPKLESVNFKARHVWLSPLSMQAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDYGVKGSFATRVAGSSDLYSVNKRRPYHSINFVIAHDGFTLRDLVSYNLKHNEANGEGGNDGSNDNFSWNCGFEGRETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKVIKYRHAHEVFSHESFLSKNEITWHEDNWDNHDSRFLAFTLHERSGADVYLAFNAHDYFIKALLPTPPEKRKWFRVKLYCDENMPNEILDAKRECPSSRLKRDRNIPKGWDWYIQD 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02490 929 CDD AmyAc_Glg_debranch 328 821 - -
Vimu10g02490 929 PANTHER GLYCOGEN DEBRANCHING ENZYME 180 503 - -
Vimu10g02490 929 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 200 298 IPR004193 GO:0004553|GO:0005975
Vimu10g02490 929 SUPERFAMILY E set domains 195 332 IPR014756 -
Vimu10g02490 929 Pfam Alpha amylase, catalytic domain 369 486 IPR006047 GO:0005975
Vimu10g02490 929 SMART aamy 348 809 IPR006047 GO:0005975
Vimu10g02490 929 Gene3D Glycosidases 583 832 - -
Vimu10g02490 929 Gene3D Glycosidases 324 506 - -
Vimu10g02490 929 SUPERFAMILY (Trans)glycosidases 327 825 IPR017853 -
Vimu10g02490 929 Gene3D - 833 918 IPR013780 -
Vimu10g02490 929 CDD E_set_GDE_Isoamylase_N 199 348 IPR044505 -
Vimu10g02490 929 Gene3D Immunoglobulins 181 318 IPR013783 -
Vimu10g02490 929 SUPERFAMILY Glycosyl hydrolase domain 832 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02490 Vimu-Chr10 36066492 36080843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02490 605 889 Glycoside Hydrolase AT4G09020 78.276 2.93e-163 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02490 K01214 - ncol:116262963 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02490 10 36066492 36080843 Vimu10g02490 10 36066492 36080843 ECH