LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g02451	ATGAATAGTGGGAGTAACTTTATTCCAAATGGTATGGTGTCTAGTGAGACACCATTTGTTGTAAAAGTGCTTGACCCCAAGAGATGGTCAAAAGCCGAAGGTAGAACTAGAGATCTGCTTAAACATATTCAGCCCAACCATACAACAGAAACATGTCGAAATGCTGTAATATCTTACCTACGATCCCTCATCATGAAATCTGTCCCTTGCCAGGTATTTCCATTTGGTTCCGTACCGTTGAAGACCTATATACCTGATGGGGACATTGATCTAACAGCGTTCTGTGATAATCACCATTCAGAAGACCGTCTGATCCAAGATATACAGCGTATTTTAGAGAGAGAAGAGAAGAATCAGGACGCTCAATTTAAAGTCAAAGAGGTTAAGTATATCGAGGCCAAGGTGAAGATTATCAAGTGTTTAGTCGAAAACTTTGTAGTTGACATATCTTTCAACCAGATTGGTGGTTTGGGAACACTTTGTTTTATTGAAGAGGTGACTGAAGTTCTCATCATTATTATTTTACTTTCAAACTTTTTGCAGAGATCTCTGACAAAAGTAATTTTGTGTTCCAGCCGCATCCTGGGATCTTACCATGGACTTCTTTCAACCTATGCATTGGAAACTTTAGTCATATATGTATTTCATGTTTACAGTTGTACATTTGCTGGACCACTTGAGGTACTCTATCGATTTTTGGATTTCTTCAGCAAATTTGACTGGAGCAAGTATTGTCTCAGCTTGCGAGGTCCAGTGCCTATAAGTTCACTCCCTAATATGAAAGCTGAACCTCCACGTAAGGATTGCCAAAGGTTGTTGCTGAACCAGCATTTTCTTAATGCTTGTGAATCCATGTACGGCGTTCTGTGTAGCAGCAAAGAATTACAAGAGAAACCATTTGTTTCTAAATACATTAGTATTGTAGATCCTTTGCTTCCTAACAACAACATAGGAGGAAGCATTAGAAAAGGAAACTTCTCTAGGATAAAAAGTGCAATTGCTTTAGGTGCAAAGCGAATACAGAGGTTACTGGCTTGCCCAGAAGACAATGTAATAGCTGAATTTGATTTGTTTTTTAAGAATACATGGGAGAGAAACGGTAAAGGTTACTGGATCGATTCACTCACTTATAACCGTTGCATAAGGAACGGACATGTTACAACTAGTGTTGAACATTATGGTATTTACCAAAATCTTTCTAACTTTTCAGAAGAATCAAAGCAGATGCTAGGACCCTCTCATGGACTTGCTGCTCCTCAAACTTTGAGATCAAAGCATGGCGGCGTTTTCACTGGTACAATGGCCTCTGATATGCAGCATACAAATACCATGAAGAATGCACTTGCTAATAGAGACAAAAGTGCTATATGTTCATCATATGAAGTTCGTGACCCGCCTTACTTTCCCGGGTTTTGTTCTAGTTTAGAATTTGGTCCTTTGTATAGTGAAGCTTCAACTCATCATTGCTACAAGACCAGAGTTTCATCTGAAAATTATCAACCTTTTGGGCAGATTTCGTATGATTGGAGAAATGAATATGAAGATGAGCCAGAACATTCTTCAAGTGGTTATTATTGCAAATATGGGTTGGACGTCAATGATGAAAATATCTGTCCGGTTGATGGAGCAATGCTGATGCAACAGGAAAAGTTTGGTTTTCCTTATTTCAATGAATACCTGCAAGCACCAGTGAATGTGAATCCACGTGTACCTTTCCCACCACCCCATCTTTTAGCTCCTGGATATATGCATGAAAACTCATTTGGGATGTTTCGAGAAGATGCCTCTTCTTCTCAGTACTTTCCAGGCTACAATATGCCTCATTATCACAACACAGCTCCATTTCCATTTGCGAGACCATTCTATGAGGGAGAATTTACTGAACCATTTGATTATAGCTCATCAGTACCTCATCCAGACCATCAAAGACAAATGGATATTAACAAAGGTTCCAGCTCTGGTAATTCATCTTGGCAGACAAGTGCTTCAAGCTACACGCCAAAAGATTATGAGAACACTAGTACTGAAGTTATGAATTCAGATTTTAAAGCTCTTCAATTAGGTAAGAAACTGCTAAAGACTGCGCCTAACTCATCGATTCCTGATCTTGTTGGCCCTTCTAGTCCGAGTCAGAGAACCGTTGATGACCAACGTTTTCAACCAGTTGCAGATGGTTCCTCTGGACCATCATTTCAAGTTCCTACCATGTTCCCATTCTCCAATCTTCCTACCGAGACTGAAACTACTTTTGCAGCCAGAAATAATGTGGGGATGATGCATGCTGGTTTAGGCAATCTTTATCCGCCAGAGTCGAATGCCAGTTCGAGCTTAGCTCAACATGCTACACATACTAGTCATGATACAGCAGCTACTTCAGGGTACTTTGTGAATGAAGGTTATGATATACTGGATAGTGATTTTTTAAGCTATTGGTGGAATCTGCAATATGGAAAGTTTTTCAAGAATCAAATATCAAGGGTACCTTTTCCTCCCTTTGCTACAGTGCCAATGCATTTAAGGGCACAATTTGCGGGGCACATGAAACCTCAGCGAGGTATCATGAACATTATGGAGCATGTTCAAACCCCGATTCCTGCGATTCCATATGGAGATGTTTCTGGGAATATTAATGAACGTGTTGGCTTTTGGCTTCCAAGAACTAGTGATGGGACTGGGACTTACTTTCCCAAGATAAATCCTTCTAGTTATTACGAGGTTAATATACTCACTACCCTTTCAACTGTGAATTCTCAGCCAAGGTTTTGCAAGAAAAATCGTCTTCCGCTAAGTCCATACATCCAAAATCCCAAATATGAAAAGAAGGATAACCATAGTGAAAGGAATGAGAATTTGCATTTGAATTCAAAGGAAAGGTTTCCCAGCTATGGCCAGTTGCATGGAAAATTTGAGAAGCCAGGTTCAAGTGAATCATCCCATCGAGGTGAAAGCTCAGCAAGAGGTACTAGTGAGGTGGAAAAACCCGGAAGGGATTCTAACAGCACTTTTAGACATGAGCCCTCATCATCAAATAACCTCTGGTAA	3042	0.4001	MNSGSNFIPNGMVSSETPFVVKVLDPKRWSKAEGRTRDLLKHIQPNHTTETCRNAVISYLRSLIMKSVPCQVFPFGSVPLKTYIPDGDIDLTAFCDNHHSEDRLIQDIQRILEREEKNQDAQFKVKEVKYIEAKVKIIKCLVENFVVDISFNQIGGLGTLCFIEEVTEVLIIIILLSNFLQRSLTKVILCSSRILGSYHGLLSTYALETLVIYVFHVYSCTFAGPLEVLYRFLDFFSKFDWSKYCLSLRGPVPISSLPNMKAEPPRKDCQRLLLNQHFLNACESMYGVLCSSKELQEKPFVSKYISIVDPLLPNNNIGGSIRKGNFSRIKSAIALGAKRIQRLLACPEDNVIAEFDLFFKNTWERNGKGYWIDSLTYNRCIRNGHVTTSVEHYGIYQNLSNFSEESKQMLGPSHGLAAPQTLRSKHGGVFTGTMASDMQHTNTMKNALANRDKSAICSSYEVRDPPYFPGFCSSLEFGPLYSEASTHHCYKTRVSSENYQPFGQISYDWRNEYEDEPEHSSSGYYCKYGLDVNDENICPVDGAMLMQQEKFGFPYFNEYLQAPVNVNPRVPFPPPHLLAPGYMHENSFGMFREDASSSQYFPGYNMPHYHNTAPFPFARPFYEGEFTEPFDYSSSVPHPDHQRQMDINKGSSSGNSSWQTSASSYTPKDYENTSTEVMNSDFKALQLGKKLLKTAPNSSIPDLVGPSSPSQRTVDDQRFQPVADGSSGPSFQVPTMFPFSNLPTETETTFAARNNVGMMHAGLGNLYPPESNASSSLAQHATHTSHDTAATSGYFVNEGYDILDSDFLSYWWNLQYGKFFKNQISRVPFPPFATVPMHLRAQFAGHMKPQRGIMNIMEHVQTPIPAIPYGDVSGNINERVGFWLPRTSDGTGTYFPKINPSSYYEVNILTTLSTVNSQPRFCKKNRLPLSPYIQNPKYEKKDNHSERNENLHLNSKERFPSYGQLHGKFEKPGSSESSHRGESSARGTSEVEKPGRDSNSTFRHEPSSSNNLW	1013

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g02451	1013	PANTHER	PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY	17	1007	-	-
	Vimu10g02451	1013	SUPERFAMILY	Nucleotidyltransferase	26	164	IPR043519	-
	Vimu10g02451	1013	MobiDBLite	consensus disorder prediction	972	1000	-	-
	Vimu10g02451	1013	MobiDBLite	consensus disorder prediction	637	672	-	-
	Vimu10g02451	1013	Gene3D	Beta Polymerase, domain 2	35	160	IPR043519	-
	Vimu10g02451	1013	CDD	NT_PAP_TUTase	53	157	-	-
	Vimu10g02451	1013	MobiDBLite	consensus disorder prediction	695	714	-	-
	Vimu10g02451	1013	MobiDBLite	consensus disorder prediction	700	714	-	-
	Vimu10g02451	1013	MobiDBLite	consensus disorder prediction	632	672	-	-
	Vimu10g02451	1013	Gene3D	-	182	354	-	-
	Vimu10g02451	1013	MobiDBLite	consensus disorder prediction	952	1013	-	-
	Vimu10g02451	1013	SUPERFAMILY	PAP/OAS1 substrate-binding domain	185	344	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g02451	Vimu-Chr10	35552907	35557476	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g02451	-		-	vum:124822671	1792.7