Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02442 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCGAGGACTCCAGTGGGATTGAATACAAACTTTTCCTGTAATCGTCTGAAGAGACCTTTAATTATAGCATTTAAAGGGGATAAACAAAATGACTCAGCTTTGATTGCAACTCAAGAGAAAATCCCTGTGCCCATTGCGAGCACCAAGACGCAGAAGAAAAAGATAGGGAAAGCTAACAAACTACCTAAGAGAGAAAGAGTTGCCTTTGCGGAGGAAAATTCTCCTTCTTCCTTGGATGTGGACTATAATGAAGCTGCTGCTATGCTTGAAAATATTTACAAACTCAGCCCTGCTTTTGATGCTGATAATGCAGAATGTATAGATGGTAAAATCAAAAGGGTCTCCCGGAGAAGGAAGAAGATTGTTGACGATTGTGAAGAAAAGGATGTAAACGACGATAGGGTGGTCAGAAACCAGAACAAGAAAGCTAAACGGTTGAGTCTTCATGAGCGGATTTCATTAAAGAGGAACTCGGACGGGGATGAAGTCGTTCCCACTCGACATAAAAGAAGGAATAGGATTGAGAAGATTGAAGAACTTACTCGGGAATATTCCGCATCAACTGATTTTGTCGGTATGGACTGGAGAAGAATGAAAATACCTCCCGTTCTTTCTTCTTCAGAGCATGCTTGGCTTTTCAAATTGATGCAACCTATGAAGCAGGGGTTCGAGGATTTAATTCCATTCTTGGATAACTTCACTATACTTCAAGTGAAAGAAGGTTTACAGAAGGAGCTAGAAAGAGAACCTGCTGATAGTGAAGTAGCCGATGCAACGAACATGAACATTACTCATGTAAAGAAAGCATTGGAGGTTGGTCAAGCTGCAAGAAACAAACTCATAAAGCACAATCTCCGGCTTGTCTTGTTCGTCATCAACAAATATTTTTCAGATTTTGCAATTGGCTCTAGGTTTCAAGATCTATGTCAGGCAGGAGTTAAGGGACTTATGACAGCAATTGATCGCTTTGAACCGAACAGAAGATTTCGGCTGTCAACATATAGCTTATTTTGGATTAGACATGCTATCACTCGTTCAATGACCCTCTCAAGCTTCACACGTGTTCCGTTTGGACTTGAATCGGTTCGAGCAGAAATCCAAAAAGCTAAAACTGAGTTAACAATTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGCTAAAATATCTCCGGAAAGATACCATGACGTAATGAAGGCATCAAAATCCATTCTTTCGCTGAACTCGAGGCATATAACTACACAAGAGGAGTTCATTAACGGGGTCGTTGATAATGGTGGTGTTAATGGTGATAATAGTAAGCAACCTGCTCTACTAAGACTTGCTCTTGATGATGTGGTAACTACTCAATCTCTTGAGACATTATTTGATCCCACATTTCTCATTCTGTTGAAGCTTCCTATGATCATAACTCTTGATTCCCTGAAGCCGAAGGAGAGCTTAGTTATCAGACAGAGATTTGGACTTGATGGGAAGGGTGACAGAACATTGGGAGAAATTGCTAGGAACATGAATATATCAAGGGAAATGGTTAGAAAGCACGAAATGAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGTTTGGATTATCTTCGTCGTTATGTTGTATAA 1650 0.4055 MGVVTVSSSAARTPVGLNTNFSCNRLKRPLIIAFKGDKQNDSALIATQEKIPVPIASTKTQKKKIGKANKLPKRERVAFAEENSPSSLDVDYNEAAAMLENIYKLSPAFDADNAECIDGKIKRVSRRRKKIVDDCEEKDVNDDRVVRNQNKKAKRLSLHERISLKRNSDGDEVVPTRHKRRNRIEKIEELTREYSASTDFVGMDWRRMKIPPVLSSSEHAWLFKLMQPMKQGFEDLIPFLDNFTILQVKEGLQKELEREPADSEVADATNMNITHVKKALEVGQAARNKLIKHNLRLVLFVINKYFSDFAIGSRFQDLCQAGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAITRSMTLSSFTRVPFGLESVRAEIQKAKTELTIELQRSPTEEEIIERAKISPERYHDVMKASKSILSLNSRHITTQEEFINGVVDNGGVNGDNSKQPALLRLALDDVVTTQSLETLFDPTFLILLKLPMIITLDSLKPKESLVIRQRFGLDGKGDRTLGEIARNMNISREMVRKHEMKALMKLKHSARLDYLRRYVV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02442 549 PRINTS Major sigma-70 factor signature 317 330 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 PRINTS Major sigma-70 factor signature 509 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 PRINTS Major sigma-70 factor signature 341 349 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 PRINTS Major sigma-70 factor signature 524 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 PRINTS Major sigma-70 factor signature 488 500 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 Gene3D - 363 415 IPR036388 -
Vimu10g02442 549 Pfam Sigma-70 region 3 375 439 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 Pfam Sigma-70, region 4 485 537 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 Coils Coil 369 389 - -
Vimu10g02442 549 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 86 548 - -
Vimu10g02442 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 365 428 IPR013324 -
Vimu10g02442 549 Pfam Sigma-70 region 2 290 355 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 Gene3D - 478 549 IPR036388 -
Vimu10g02442 549 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 195 357 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vimu10g02442 549 Gene3D - 46 361 - -
Vimu10g02442 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 456 542 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02442 Vimu-Chr10 35411815 35414301 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02442 K03093 - gmx:100812580 795.038