Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02428 TTCCTCCTCTCTCATGCCAAACCCAACCGATCGCCGAACCACTCTCACCGCCCAAAGAAGAGGAAGAAATCCCCCACCAAGCCCCAACCCCACCAAGACCACTCCCACGCCAGATGGAAAACCCACGCGCAACAGAACCTATATTCCTCCAAGCTCCACCAGGCCCTCGTGCGTGTCAAAGTTTCTGGCGACAAGCTCCTCCAACCTATATTCTGCTTTCAGTTGCAGGCGATGATGGATTTGGAAGTAGACGAGAACGACTTGAAAGCCGTCGGCGTCGAGCTCTTCGTCGACGATGGCCCAGGCATTTGCATTAGTGGTTGGTCGATCGAGACTAGGAGGCATTCTATATTGAACTATTCCACCATCCAGGACCCTCATCATGTTTTGGCCGTTGATATTTTGGAAGAAATATCAAAGAACTTCGATTTGATGATGGATGTGTGCTTTTCAGGTGGGAACAAAAAACTCAACTCATTTACCAAAAATGGTTTTCGGGAAGCCTTGCCGCCAGTTGAAGTTCCTGCAGCTGCTAAGTGGAAATCTAGGGTTTTCGTGATGGCGTCGAAGCGGATCTTGAAGGAACTTAAGGATCTCCAGAAGGATCCACCAACCTCTTGCAGTGCCGGACCTGTTGCTGAAGACATGTTTCACTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTCGTCACTATTCATTTCCCTCCGGACTATCCCTTCAAGCCACCCAAGGTTGCATTCAGGACGAAGGTATTTCACCCAAATATTAATAGCAATGGAAGCATTTGCCTTGACATCTTGAAGGAACAGTGGAGCCCTGCCCTAACTATTTCCAAGGTGTTACTCTCAATTTGTTCCCTGTTGACGGACCCTAATCCTGATGATCCTTTGGTCCCCGAAATCGCCCACATGTACAAGACAGATAGGACTAAGTACGAGTCAACTGCCAGAAGCTGGACCCAGAAATATGCTATGGGTTAA 1005 0.4866 FLLSHAKPNRSPNHSHRPKKRKKSPTKPQPHQDHSHARWKTHAQQNLYSSKLHQALVRVKVSGDKLLQPIFCFQLQAMMDLEVDENDLKAVGVELFVDDGPGICISGWSIETRRHSILNYSTIQDPHHVLAVDILEEISKNFDLMMDVCFSGGNKKLNSFTKNGFREALPPVEVPAAAKWKSRVFVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYESTARSWTQKYAMG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02428 334 MobiDBLite consensus disorder prediction 10 27 - -
Vimu10g02428 334 Pfam Ubiquitin-conjugating enzyme 191 327 IPR000608 -
Vimu10g02428 334 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 187 333 IPR000608 -
Vimu10g02428 334 SMART ubc_7 190 333 - -
Vimu10g02428 334 FunFam Ubiquitin-conjugating enzyme 28, E2 187 334 - -
Vimu10g02428 334 SUPERFAMILY UBC-like 182 333 IPR016135 -
Vimu10g02428 334 CDD UBCc 189 328 IPR000608 -
Vimu10g02428 334 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 215 321 - -
Vimu10g02428 334 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 260 275 IPR023313 -
Vimu10g02428 334 Gene3D Ubiquitin Conjugating Enzyme 180 334 IPR016135 -
Vimu10g02428 334 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02428 Vimu-Chr10 35208579 35213783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02428 188 300 Miscellaneous Gene Families AT3G17000 36.975 8.54e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02428 K06689 - sspl:121780244 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02428 10 35208579 35213783 Vimu10g02428 10 35208579 35213783 ECH