Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02414 ATGTCACCAGCAGTGTCTTCTACTTTTGAGTCAGAGAGAGATCCTGTGATATATGTGCACACAGTTTCAGTGGCTGGTCGCCTTCTTCCTTCAGCTAGCCGCTGGAACTCTATAGCACTTGACTTTAAACTTGCTCCTGATTCTTCCACTGCCTATGAATCTATCCCTTCCCAATATCCAAAATCTGTTGACTACGATCTTGTTATCACTGACAGGAAGCATTTTCATTGTTTTATTTTTGTTCTTGTAACAATAATTTTAGCCATCCTAGCAGCTGTTCTGTTGGTGCATTTTTTACCTCAGAAGCACAAGCACCAAGGGTCTTCAATCAATCTCAAAGTGGCAATAAACCAGGCTCTAACATTTTACGATGCCCAAAAATCTGGGCATTATCCGAGGAACAGTCCAGTGAAATTTCGGGGAGATTCAGGATTACAAGATGGGCATTCGGCTAATACTGATCTTACTGGTGGATTTTATGATTCTGGCAACAACATCAAGTTTACCTTCACCACAGCTTACACCATGACCTTGTTGAGTTGGACTGTCATGGAATATCAAAGTAAATATGCTGATATTGGTGAACTTGATCATGTTAGGGATATCATTAGATGGGGCAGTGACTACCTGCTCAAGGTGTTCATTCCCCCAAATTCAGCAGATGGATCAAACTTGACGCTGTATTCCCAGGCAAGTTACAACTTTTTTGTAGGGAATGGATCTTGTCCTGTATATGATAATATGACACATTACAGTCAAAGTATTGGGGTTGGAAGTACCATTAGTATCAACAATGAACCTAATGAGTTGAGTTGCTGGCAACGACCGGAAGATATGAAATATGAGAGACCAGTTTCAATTTGCGATGGCTCTGCTACAGATTTAGTTGGTGAAATTGTGGCAGCATTATCTGCAGCATCGATGGTATTCAAGGAAGACAGAGATTACTCAAAGAGACTTAGGGATTCAGCAGAAAGGCTCTTTGGGGCCATACCTACCACACAAGGGACTCACACCATGGTTGATGCATGTGGAAAACAAGCAACAATGCTTTATAACTCAACCAGCTACAAAGATGAGTTGGCTTGGGGGGCAACATGGTTATTTCTTTCTACTACAAACACTAGTTACCTTGCAATTGCAACTGAAACTTATTTTTCAGCCAAGAGTAGTGAATCAAGCGTTGACAAAGGTGTTGTTTACTGGAATAATAAGCTCAATGCTGTGGAGGTTTTGCTAACCGGTATTCGATACTTCCGTGATCCTGGCTTCCCATATGAGGATGTTCTGAAACTTTCATCTAACTCAACCGATGCACTCATGTGTTCTTATCTATTCAATAAATACTTTAGCAGGACACCTGGTGGGTTGATTATCCTGAAACCTGATAATGAACCACTGCTCCAGTTTGCTGCTACAGCATCTTTTCTCAGTGAATTATACAGCGATTACCTTGATCATCTCAAAATGTCTAGTGCAAGTTGCAAGACTGATACATTCTCCGTGAAAATGCTTCGTGACTTTGCCACTTCTCAGGCAGTTAACTACATCTTGGGGCAGAACCCTTTGCAGATGAGTTATATAGTAGGCTATGGTGACAGGTATCCTGTCCAAGTTCATCACAGAAGTGCATCAATCCCTTGGAATAACCAACCTTACAATTGTGACGATGGTAAGAGATGGCTAAACTCTAAAGATCCAAATCCACAAGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACACTAATGATAATTTCATGGACCAAAGGACCAACCAAAAGTTCACTGAACCGAGCATAGCCAGCAACGCAGGCTTAGTTGCAGCATTGATTGCACTTCAAGATCCTCCTTATAAATCACGTGACCTAAAAAGCACATTGTGGGGATGGACTTGA 1896 0.4177 MSPAVSSTFESERDPVIYVHTVSVAGRLLPSASRWNSIALDFKLAPDSSTAYESIPSQYPKSVDYDLVITDRKHFHCFIFVLVTIILAILAAVLLVHFLPQKHKHQGSSINLKVAINQALTFYDAQKSGHYPRNSPVKFRGDSGLQDGHSANTDLTGGFYDSGNNIKFTFTTAYTMTLLSWTVMEYQSKYADIGELDHVRDIIRWGSDYLLKVFIPPNSADGSNLTLYSQASYNFFVGNGSCPVYDNMTHYSQSIGVGSTISINNEPNELSCWQRPEDMKYERPVSICDGSATDLVGEIVAALSAASMVFKEDRDYSKRLRDSAERLFGAIPTTQGTHTMVDACGKQATMLYNSTSYKDELAWGATWLFLSTTNTSYLAIATETYFSAKSSESSVDKGVVYWNNKLNAVEVLLTGIRYFRDPGFPYEDVLKLSSNSTDALMCSYLFNKYFSRTPGGLIILKPDNEPLLQFAATASFLSELYSDYLDHLKMSSASCKTDTFSVKMLRDFATSQAVNYILGQNPLQMSYIVGYGDRYPVQVHHRSASIPWNNQPYNCDDGKRWLNSKDPNPQVLLGAMVGGPDTNDNFMDQRTNQKFTEPSIASNAGLVAALIALQDPPYKSRDLKSTLWGWT 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02414 631 PANTHER ENDO-1,4-BETA-GLUCANASE 85 614 - -
Vimu10g02414 631 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 516 542 IPR018221 -
Vimu10g02414 631 SUPERFAMILY Six-hairpin glycosidases 113 616 IPR008928 GO:0005975
Vimu10g02414 631 Gene3D - 109 616 IPR012341 GO:0005975
Vimu10g02414 631 Pfam Glycosyl hydrolase family 9 115 610 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02414 Vimu-Chr10 35062565 35064929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02414 61 613 Glycoside Hydrolase AT5G49720 42.908 8.35e-142 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02414 K01179 - gmx:100805472 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02414 10 35062565 35064929 Vimu10g02414 10 35062565 35064929 ECH