Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02401 ATGGGTAAGGGAAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCATTTGATCTACAAGATTGGTGGTATTGGTACCGTTCCAGTTGGACGTGTTGAGACCGGTGTCTTGAAACCTGGTATGGTGGTGACTTTTGCTCCAACTGGTTTGACAACTGAAGTTAATAAAGATAAGATTTCTGTGGATGATTCTGACCTAGCTGAGAGTGAAAAAAAAAAGACCCACTTGCCACAGGATGTAATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCTCGGTCTGTTGCTTTACAAAATGCCAACAATACCGGTATTCGGTTTATACTTGGTGGTTCTTCTGTTCTTAATTCTAAAAGGTTTTTAAAGGACTTGGAAGAAGCTCAAAGGGTAGCTCGCTCTAGCACCACTGTTGTTTGA 450 0.42 MGKGKVHINIVVIGHVDSGKSTTTGHLIYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVNKDKISVDDSDLAESEKKKTHLPQDVIIFIVGGTTYEESRSVALQNANNTGIRFILGGSSVLNSKRFLKDLEEAQRVARSSTTVV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02401 149 Gene3D - 48 145 IPR027482 -
Vimu10g02401 149 SUPERFAMILY Sec1/munc18-like (SM) proteins 83 137 IPR036045 -
Vimu10g02401 149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 41 IPR027417 -
Vimu10g02401 149 SUPERFAMILY Translation proteins 28 73 IPR009000 -
Vimu10g02401 149 PANTHER TRANSLATION FACTOR 29 78 - -
Vimu10g02401 149 Pfam Elongation factor Tu GTP binding domain 6 35 IPR000795 GO:0003924|GO:0005525
Vimu10g02401 149 Pfam Sec1 family 63 134 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02401 Vimu-Chr10 34938383 34941316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02401 28 64 Eukaryotic Initiation Factors Gene Family AT5G60390 91.892 7.57e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02401 K12479 - gmx:100782786 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02401 10 34938383 34941316 Vimu10g02401 10 34938383 34941316 ECH