Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02386 ATGAGTCACCGGGGAATCGATGACGATTACATGGAAGACGAGCAGGTCGCAGACTTCGACGAGGAGGATGACCGCCGGGGGCGCGGTGGCGGCAGCAGGAAGCGCAGAAGATCTGATTTCATTGACGATGACGCTGAGGAGGTAGATGAGGAGGAGGAGGTTGACAATGATGAGGATTTCGATGCCCGAGGCGGTAGCAGGCGCCAGTACAAAAAGCTTTCCGCTTCTAATTTTTTTGACGAGGAGGCCGTGGTGGATAGCGATGAAGAAGAGGATGAGGAAGAGGAAGAGGAAGAGGGCGAAGAGGACTTCATTGTTGAGGGTGGAGCCAATCTATCAGAAGAAGATGATGGGAGAAGGATGTGGAATAGGCGAATGCTGCCACATCATCAAGAAGATCATGAAGATCTTGAAGCTGTGGCCAGAAGCATCCAGGAACGTTATGGAAGGCACCTAACGGATTATGATGAAGAAACAATAGAACAACAAGCTCTTTTGCCGTCTGTGAGAGATCCAAAGCTTTGGATGGTCAAATGTGCAATTGGTCGCGAAAGAGAAGCATCCGTTTGCCTCATGCAAAAGTGCATAGATAGAGGATCTGAATTGCAAATAAGATCAGCTATTGCTCTTGATCATCTCAAAAACTATATATACGTGGAAGCAGATAAAGAAGCCCATGTCAGAGAGGCTTGCAAAGGTCTACGCAATATATTTGGCCAAAAAATAACTCTTGTCCCAATCAGAGAAATGACTGATGTTCTGTCAGTTGAAAGCAAAGCAATTGATCTTGCTAGAGATACTTGGGTTAGAATGAAGATCGGGACCTATAAAGGGGACCTTGCCAAAGTAGTGAATGTTGATAATGTGAGGCAGAGGGTTACTGTCAAATTAATTCCAAGGATAGACCTACAGGCTCTTGCAAATAAATTGGAAGGTAGAGAGGCTGTGAAAAAGAAGGCTTTTGTTCCTCCCCCTCGATTTATGAATGTTGATAAAGCAAGAGAACTGCATATCCGTGTGAAGCATGGACGTGACCCATATGGTGAACGTTTTGATGCAATTGGGGGCATGATGTTCAAAGATGGTTTCTTATACAAAACTGTTTCAATAAAATCCATCACTGCTCAGAACATAAACCCTACTTTTGATGAGTGGGAAAAATTTTGTAAAGCTGGTGAGAGTGGAGATGATGATGAGTCTAGTTTTGCGAATAAAAAGAAAAGGCATTTTATGAAAGGTGACGCCATCATGGTGGTTAAGGGTGATTTGAAACACCTTAAGGGAAAGGTGGAGAAGGTGGATGAAGATAATCTTCATATAAGACCCGAAACAGAGGGACTCCCAAAAACCATTGCTATAAATAAAAAAGAGGTTCGTAAATATTTTGAGCCTGGAAACCACGTTAAGGTTGTTTCTGGCGCTCAAGAAGGGATCACGGGCATGGTTGTGAAGGTCGAGCAGCATGTCTTGATTTTAATATCTGATACAACAAAAGAACATATTCGTGTCTTTGAAGATGATGTCGTAGGAAGTTCAGAAGTAACGACTGGAGTTACTAGAATTGGGGACTATGAACTCCATGATCTTGTATTGCTTGATAATATGAGCTTTGGTGTCATAGTACGTGTAGAAAGTGAAGCATTTCAGGTTCTAAAGGGGATTCCTGACAGACACGAAGTTGTGCTGGTTAAATTAAGAGAGATCAAATGTAAGATAGATAAGAAAATAAGTGTCCAAGATAGATATAAGAATACAGTTTCATCAAAGGATGTTGTCCGGATTGTTGATGGTTCAAGTAAAGGGAAACAAGGTCCTGTGGAACACATATATAGAGGAATCTTGTTCATCTTTGATCGCCATCAACTTGAACATGCAGGCTTTATATGTGCTAAGGCCCAATCATGTGTGGTAATGGGGGGTTCACGCTCCAGTGGTGGCAGAAATGGTGATGCCTACTCAAGATTTCCCACTCTTAGAAGTCCAAGTCGTATTCCACCATCCCCAAGGAGGTTTCCTCGTGGAGGGCCAATGGATTCTGGAGGAAGACATAAGGGTGGGAGGGGGCATGACGATTTGGCTGGTACAACTGTTAAAGTGTGTCAGGGTCCATATAAAGGTTATCTAGGGCGTGTTATAGATGATAAAGGCACATCAGTTCGTGTTGAGCTTGAATCTCAAATGAAGGTTGTAACAGTTGACCGCAACCATATATCTGACAATGTGGCTATAACTCTATATTGTGATACATCTCGCTATGGAATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCCCTACACCCATATATGACTCCAATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCATATACTCCAATGAGTCCAACAAGGATGGTTCGTACAAGGTAG 2433 0.4336 MSHRGIDDDYMEDEQVADFDEEDDRRGRGGGSRKRRRSDFIDDDAEEVDEEEEVDNDEDFDARGGSRRQYKKLSASNFFDEEAVVDSDEEEDEEEEEEEGEEDFIVEGGANLSEEDDGRRMWNRRMLPHHQEDHEDLEAVARSIQERYGRHLTDYDEETIEQQALLPSVRDPKLWMVKCAIGREREASVCLMQKCIDRGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVNVDNVRQRVTVKLIPRIDLQALANKLEGREAVKKKAFVPPPRFMNVDKARELHIRVKHGRDPYGERFDAIGGMMFKDGFLYKTVSIKSITAQNINPTFDEWEKFCKAGESGDDDESSFANKKKRHFMKGDAIMVVKGDLKHLKGKVEKVDEDNLHIRPETEGLPKTIAINKKEVRKYFEPGNHVKVVSGAQEGITGMVVKVEQHVLILISDTTKEHIRVFEDDVVGSSEVTTGVTRIGDYELHDLVLLDNMSFGVIVRVESEAFQVLKGIPDRHEVVLVKLREIKCKIDKKISVQDRYKNTVSSKDVVRIVDGSSKGKQGPVEHIYRGILFIFDRHQLEHAGFICAKAQSCVVMGGSRSSGGRNGDAYSRFPTLRSPSRIPPSPRRFPRGGPMDSGGRHKGGRGHDDLAGTTVKVCQGPYKGYLGRVIDDKGTSVRVELESQMKVVTVDRNHISDNVAITLYCDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPTRMVRTR 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02386 810 FunFam Transcription elongation factor SPT5 153 255 - -
Vimu10g02386 810 MobiDBLite consensus disorder prediction 21 42 - -
Vimu10g02386 810 Pfam Early transcription elongation factor of RNA pol II, NGN section 173 254 IPR005100 -
Vimu10g02386 810 CDD KOW_Spt5_3 461 509 IPR041976 -
Vimu10g02386 810 MobiDBLite consensus disorder prediction 82 103 - -
Vimu10g02386 810 CDD NGN_Euk 173 255 IPR039385 -
Vimu10g02386 810 MobiDBLite consensus disorder prediction 1 103 - -
Vimu10g02386 810 FunFam Transcription elongation factor SPT5 404 461 - -
Vimu10g02386 810 SMART kow_9 461 488 IPR005824 -
Vimu10g02386 810 SMART kow_9 690 717 IPR005824 -
Vimu10g02386 810 SMART kow_9 585 612 IPR005824 -
Vimu10g02386 810 SMART kow_9 409 436 IPR005824 -
Vimu10g02386 810 SMART kow_9 262 289 IPR005824 -
Vimu10g02386 810 PANTHER SUPPRESSOR OF TY 5 56 800 IPR039659 GO:0006357|GO:0032784
Vimu10g02386 810 MobiDBLite consensus disorder prediction 676 691 - -
Vimu10g02386 810 Gene3D - 262 304 IPR014722 -
Vimu10g02386 810 Pfam Spt5 transcription elongation factor, acidic N-terminal 78 167 IPR022581 -
Vimu10g02386 810 CDD KOW_Spt5_5 690 738 IPR041978 -
Vimu10g02386 810 FunFam Transcription elongation factor SPT5 262 304 - -
Vimu10g02386 810 MobiDBLite consensus disorder prediction 785 810 - -
Vimu10g02386 810 Pfam KOW motif 464 489 IPR005824 -
Vimu10g02386 810 Gene3D - 464 513 IPR014722 -
Vimu10g02386 810 SUPERFAMILY Translation proteins SH3-like domain 399 451 IPR008991 -
Vimu10g02386 810 SMART nusgn_4 171 257 IPR006645 GO:0140673
Vimu10g02386 810 MobiDBLite consensus disorder prediction 643 694 - -
Vimu10g02386 810 CDD KOW_Spt5_4 589 631 IPR041977 -
Vimu10g02386 810 Gene3D - 153 255 IPR036735 GO:0006355
Vimu10g02386 810 MobiDBLite consensus disorder prediction 43 59 - -
Vimu10g02386 810 SUPERFAMILY Translation proteins SH3-like domain 453 511 IPR008991 -
Vimu10g02386 810 Gene3D - 403 461 IPR014722 -
Vimu10g02386 810 FunFam Transcription elongation factor SPT5 677 740 - -
Vimu10g02386 810 CDD KOW_Spt5_1 266 303 IPR041973 -
Vimu10g02386 810 CDD KOW_Spt5_2 410 460 IPR041975 -
Vimu10g02386 810 Gene3D - 674 740 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02386 Vimu-Chr10 34773950 34778021 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02386 K15172 - gmx:100801380 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02386 10 34773950 34778021 Vimu10g02386 10 34773950 34778021 ECH