Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02366 ATGGCTCTGGAGAAGTGTTTAGGAGTAACCACAGTGCGCACAGCCACACCCCACCTTTCTCCGTGCTTTCCAACTTCAAGGGAAAAGCTGTTTTTCCCAACTCACAGAGGTTTCAAGAAATCCATGTCAACCACAAAACTCTCATACCAATCTCTCTATTCAACCTACCGAAAATCCCGTTTTGTATGTAATGCTCGTGAAGCAGTAAATGAAGTGAAAGTGGTGACTGACTCAAGCTGGAACAAACTTGTGATAGCCAATGAAACCCCTGTTCTGGTAGAATTTTGGGCACCGTGGTGTGGCCCATGCAGGATGATAGCACCTGTTATCGATGAGTTAGCGAAGCAATATGGTGACAAAATTGCATGCTATAAGCTTAACACAGATGACTCCCCAAACATAGCAACTCAGTACGGCATCAGAAGCATACCAACAGTTCTGTTCTTCAAGAATGGAGAGAAAAAAGAAAGCATAATCGGTGCAGTTCCCAAGTCTACTCTGTCAGCGACAATTGAAAAATATGTTGATTTATAA 534 0.4307 MALEKCLGVTTVRTATPHLSPCFPTSREKLFFPTHRGFKKSMSTTKLSYQSLYSTYRKSRFVCNAREAVNEVKVVTDSSWNKLVIANETPVLVEFWAPWCGPCRMIAPVIDELAKQYGDKIACYKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATIEKYVDL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02366 177 PRINTS Thioredoxin family signature 99 108 - -
Vimu10g02366 177 PRINTS Thioredoxin family signature 91 99 - -
Vimu10g02366 177 PRINTS Thioredoxin family signature 139 150 - -
Vimu10g02366 177 NCBIfam thioredoxin 76 174 IPR005746 GO:0015035
Vimu10g02366 177 PANTHER GEO12009P1 64 175 - -
Vimu10g02366 177 SUPERFAMILY Thioredoxin-like 60 176 IPR036249 -
Vimu10g02366 177 FunFam Thioredoxin 66 175 - -
Vimu10g02366 177 Gene3D Glutaredoxin 72 176 - -
Vimu10g02366 177 ProSitePatterns Thioredoxin family active site. 92 110 IPR017937 -
Vimu10g02366 177 ProSiteProfiles Thioredoxin domain profile. 63 176 IPR013766 -
Vimu10g02366 177 CDD TRX_family 78 172 - -
Vimu10g02366 177 Pfam Thioredoxin 72 173 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02366 Vimu-Chr10 34501980 34503128 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02366 K03671 - gmx:100500292 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02366 10 34501980 34503128 Vimu10g02366 10 34501980 34503128 ECH