Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02349 ATGGCATCGTGGTTGTTCGCAAGGTCTAGAACCTTCTTCTCTACTCCTCATCGCAGCAAATCCTTCTTCTTCCTACCATTTCTTAACCACTCCTCTTCTTCCTCCTTTCGATCGACAACACTGCCTCACAGAAACTCACCAACCCTTTTCTGCTTCTCGCGTCACGAATCAACCAAAGCTGATGCACAGTTGGAATTGGACCATGATGTAACCGAGGACGACGTTAATCAGGCGATTGATTTTCCTGGAGGAAAAGTTGGATTTACTTCTGAAATGAGATTCATTTCCGAGACTGCTCAGAAAAGGGTTCCCTGTTATCGTGTTCTTGATGACAATGGTGAGCTCCTTAAATACAGCGACTATGTGCAGGTTAGCAAGGAAATGGGTGTGAAGATGTATTCTCACATGGTCACTCTTCAAACTATGGACAGCATATTCTATGAAGTGCAGAGGCAAGGCAGAATTTCCTTCTATCTCACCCAAATGGGGGAAGAAGCAGTTAACATTGCATCCGCAGCTGCACTTGCTCCTGATGATATCGTATTGCCTCAGTACCGAGAACCTGGAGTTTTACTGTGGCGTGGTTTTACACTGCAACAATTTTTCCATCAGTGCTTTGGAAACACTTTTGATTTGGGGAAAGGCAGACAGATGCCCATACATTATGGATCAAACAAGCACAATTACTTCACAGTCTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTGGGGGCTGCGTATTCTCTTAAAATGGATGGCAAAAGTGCATGTGCAGTCACTTTTTGTGGGGATGGTGGCACCAGTGAGGGAGATTTTCATGCTGCCATGAATTTTGCAGCTCTGATGGATGCCCCTGTTGTTTTCATCTGTCGTAACAACGGATGGGCCATCAGTACACCTGTACAAGAACAATTTCGAAGTGATGGAATTGTAGTGAAAGGTAAAGCTTATGACATCTGGGGTATCAGAGTAGATGGAAATGATGCTCTTGCAGTTTATAGTGCAGTTCACACTGCTAGAGAAATCGCTATAAGAGAACAAAGACCTATTTTAATTGAGGCTCTCACTTATAGAGTAGGACATCACTCTACATCTGATGATTCAACTAAGTACCGGGCAATTGATGAGATTGAATATTGGAAGATGGCAAGAAATCCTGTGAGTAGATTCAAGAGATGGGTGGAAAGGAATGGTTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTATTAAGAAACAGCTAATGCATGCGATTCAGGTGGCAGAGAAAGCACAAAAACCTCCACTCGAGGACATGTTCACTGATGTCTATGACCAAGTGCCATCAAACCTTCAGGAGCAAGAAAGATTACTAAGGAAATCCATCGAGAAGCATCCGAAGGACTACCCTTCTGATGTTCCTTTGTAG 1416 0.4386 MASWLFARSRTFFSTPHRSKSFFFLPFLNHSSSSSFRSTTLPHRNSPTLFCFSRHESTKADAQLELDHDVTEDDVNQAIDFPGGKVGFTSEMRFISETAQKRVPCYRVLDDNGELLKYSDYVQVSKEMGVKMYSHMVTLQTMDSIFYEVQRQGRISFYLTQMGEEAVNIASAAALAPDDIVLPQYREPGVLLWRGFTLQQFFHQCFGNTFDLGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGGTSEGDFHAAMNFAALMDAPVVFICRNNGWAISTPVQEQFRSDGIVVKGKAYDIWGIRVDGNDALAVYSAVHTAREIAIREQRPILIEALTYRVGHHSTSDDSTKYRAIDEIEYWKMARNPVSRFKRWVERNGWWSDKDELELRSSIKKQLMHAIQVAEKAQKPPLEDMFTDVYDQVPSNLQEQERLLRKSIEKHPKDYPSDVPL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02349 471 CDD TPP_E1_PDC_ADC_BCADC 132 424 - -
Vimu10g02349 471 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 74 470 - -
Vimu10g02349 471 Pfam Dehydrogenase E1 component 135 431 IPR001017 GO:0016624
Vimu10g02349 471 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 72 469 - -
Vimu10g02349 471 Gene3D - 74 469 - -
Vimu10g02349 471 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 103 466 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02349 Vimu-Chr10 34277128 34281426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02349 1 308 Acyl Lipid Metabolism Gene Families AT1G21400 63.782 4.46e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02349 K00166 - gmx:100789693 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02349 10 34277128 34281426 Vimu10g02349 10 34277128 34281426 ECH