Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02347 ATGAGAAAGCAATTAGCAGTTGTCTCAGCAATAAAGCTATTTCAAGGTGATCAGCTTTTACCAAACTTCGCAAAAAATGCTTATTTAGACCCTGTGGCAACCGGTGTTACTGCCATGACGGAGTCACAACCGGAGGCAAGTTCCTCTCGCCACTGCAACAAATATCCAACCCCGGCAACAATATTTTTTTTGTCGAAGATCAGTTCTAATTCACCACAATCAGTCTCGTCCGCAACATCGTGGCCGACACTCAAATTCTCCGTCGACCCATTGACTGATCCCCAAGGACGCCGAATCTGGCGCAATATAGCCCACGCCACCGTATTTGGGTCAGTCGGAGCCTCCGTCATGGAAGTCACAAAAGATCCTAACTCAAACCCGGGTCGCTTGGACGATTCAGATCCCGAACTCGAACTCTACACCATCCCAAGCTCTTCAAGATGGTTCGCGTGGGACGAAATTCACGAAACGGAGAGAACAGCATTCAAGGAATTCTTCGACGCGAGCTCCATTTCGAGAACGCCCAAGATATACAAAGAATACAGAGACTTCATCATCAACAAGTACAGGGAAGAGCCTTCCAGGAGGCTCACATTCACCGAGGTCAGAAAATCGCTGGTTGGTGACGTCACATTTCTGCACAAGGCGTTCCATTTCCTAGAGAATTGGGGTTTGATCAACTATGGCGCGCCCTCTGCTGCGGCCGCGGAGAAGGAGGAGGAGGAGGAGGAGCCGTGCAAGGTTCGCCTCGAAGAAGGAACCCCCAATGGGATTCGGGTGGCGGCCACACCGAACTCGTTGAAGCCGATGTTGGTGCCTCGCGGTGCGAAGACCGGTGGAAATGCGACTGGGGCTTCTCTCAAATTGCCGCCGCTCGCCTCCTATTCGGATATTTATGGGGATTTGATTAGGCAGAAAGAGGGGAACTGTGGGCTTTGTGGTGGCAAATGTGGTTCAGGACATTACCGATGTACCCAGGATAATTTCATTATTTGTGCAAATTGTTTCAAAAGTGGGAATTATGGGGAGAAAAGGTTTGCAGAGGATTTCGTATTGAGTGAGTCAAGTGAAAACAGTGGCAAGCATGACACTGTCTGGACTGAGGGAGAAATTCTTCTCCTTTTGGAATCTGTTTTGAAGCATGGGGATGACTGGGAACTGGTTGCTCAAAGTGTTCAAACCAAGACTAAACTTGATTGTATCTCAAAACTAATTGAGCTGCCTTTTGGAGAGCTCATGTTGGGCCCTGCTCTCAACGTTAGTGGTGCTAATGGTATCGTGGTGAACAATGCAAACCAAGTTCAGTCATCTTCATCTGACTGCCAAGAAATTTCAAAAACAAAGGATCAACCTCCTGAGCTTACAAATGAAAATGAGCAGAACGGAGATGCTGTGAAGGAAAGTCCTTCAAAAAGACAGCGTGTTACTCCCTTGTCAGATTCCAGTGGTTCACTAATGAATCAGGTGGGACTGATCTCTAATGTGGTTGACCCTCATATCACAGCTGCTGCAGCTGATGCTGCTGTTTCAGCTCTTTGTGATGAGAATTTGTGTCCAAGGGAGATATTTGATGCTGAAGAAGATTCAGCAAGAGATCTTGAGGGAGAAGGTTTAGAGATGGAGAGGTCCTCTATATCAGGGAGAGCAATGGTGAGTTCATGTTCCTTGTCAGATGAAGGTTTGAGGCAGTACCTTGTAATGGGGTATTATAAGGATTTGGATGGGATTGAGTTGCTAGAAGTTAAATTCTTCAATTGGCTAAGCCACAAAACCAAGGCTCTGCAAGTATATTTGCATAGGCCTAAGACACCAAAAACTGAAATACCTTTGCCACTGCGTGTAAGAGCCGCCACTGCAACTGCTCTTGGAGCTGCTGCTGCTCGAGCAAAGTTGTTGGCAGACCAGGAAGTCAGAGAGATTGAACATTTAGTGGCAACTATAATTGAAGCTCAGATCGATAAGTTGCTGCACAAGGTTAAACATTTTGACGATCTGGAGCTGTTGATGGAAAAGGAACATACTGAAATGGAAAAGTTAAAAGATTCTATCTTGACTGAACGGATTGATGTGTTAAGGAGAACATTTAGATCTGGAATCACTAGATGGAAGGATTATTCGTATGTAAAATCTTAG 2133 0.4609 MRKQLAVVSAIKLFQGDQLLPNFAKNAYLDPVATGVTAMTESQPEASSSRHCNKYPTPATIFFLSKISSNSPQSVSSATSWPTLKFSVDPLTDPQGRRIWRNIAHATVFGSVGASVMEVTKDPNSNPGRLDDSDPELELYTIPSSSRWFAWDEIHETERTAFKEFFDASSISRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLHKAFHFLENWGLINYGAPSAAAAEKEEEEEEPCKVRLEEGTPNGIRVAATPNSLKPMLVPRGAKTGGNATGASLKLPPLASYSDIYGDLIRQKEGNCGLCGGKCGSGHYRCTQDNFIICANCFKSGNYGEKRFAEDFVLSESSENSGKHDTVWTEGEILLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGPALNVSGANGIVVNNANQVQSSSSDCQEISKTKDQPPELTNENEQNGDAVKESPSKRQRVTPLSDSSGSLMNQVGLISNVVDPHITAAAADAAVSALCDENLCPREIFDAEEDSARDLEGEGLEMERSSISGRAMVSSCSLSDEGLRQYLVMGYYKDLDGIELLEVKFFNWLSHKTKALQVYLHRPKTPKTEIPLPLRVRAATATALGAAAARAKLLADQEVREIEHLVATIIEAQIDKLLHKVKHFDDLELLMEKEHTEMEKLKDSILTERIDVLRRTFRSGITRWKDYSYVKS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02347 710 SUPERFAMILY Homeodomain-like 138 234 IPR009057 -
Vimu10g02347 710 Pfam SWIRM-associated region 1 620 694 IPR032451 -
Vimu10g02347 710 ProSiteProfiles SANT domain profile. 361 412 IPR017884 -
Vimu10g02347 710 PANTHER SWI/SNF COMPLEX-RELATED 74 690 - -
Vimu10g02347 710 Gene3D - 146 232 IPR036388 -
Vimu10g02347 710 Pfam SWIRM domain 143 228 IPR007526 GO:0005515
Vimu10g02347 710 Coils Coil 662 682 - -
Vimu10g02347 710 SUPERFAMILY Homeodomain-like 361 414 IPR009057 -
Vimu10g02347 710 Gene3D - 362 410 - -
Vimu10g02347 710 SMART sant 362 410 IPR001005 -
Vimu10g02347 710 MobiDBLite consensus disorder prediction 437 482 - -
Vimu10g02347 710 FunFam SWI/SNF complex subunit SMARCC2 isoform c 146 233 - -
Vimu10g02347 710 Pfam Myb-like DNA-binding domain 366 404 IPR001005 -
Vimu10g02347 710 ProSiteProfiles SWIRM domain profile. 140 237 IPR007526 GO:0005515
Vimu10g02347 710 CDD SANT 366 403 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02347 Vimu-Chr10 34258135 34264556 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02347 K11649 - gmx:100790238 696.427