Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02346 ATGTACCCATTTTTTAAGCACACGCAAGGTTCTTACTTTTCTCTTTCTTATTGCTCTCTTCTCCTAAGCCACAGTTTATCTCAAAAATCGCTTAACTTTGTCAAACTCGTGCATGCCAACTTCATCAAACTGGGTCTTAACACCTACACCTATTTGGGTAATCGCTGTGTCAACCTTTACTCAGAGCTCGGCCACATCAATGATGCATTGAAGGTGTTTGACGATATTTCTCACAAGAACACCACGTCCTGGAATATTTGCTTAAAAGCGTTGCTGAAAAGTGGCCAGCTCGGCAAGGCCTGCCACGTGTTTGGTGCAATGCCTGCTAGAGATGTTGTTAGTTGGAACTCCATGATTTCGGGTTATGCTTCTTGTGGGTTTTTAAGTCATGCGTGGGAGATTTTCGTTGAAATGCAAGGCACTGGTGTGAAACCAAGTGAGTTCACTTTCTCCATTGTGATGTCACTCGTGCCAAGCCCCTCTCATGCTAAACAGATTCATTGTAGGATGATCAGAAGTGGGATGGATTTGGATAATGTAGTTCTTGGGAATTCGTTAATAACAATGTATGGAAAGATTGGTCTTGTTGAATATGCTTTTGGTGTGATTATGACTATGAAACACTTTGATGTTATATCTTGGAACTCTTTGATCTGGGCCTGTCAAAGAGCTGGGAACCATGAGCAGGCTTTCGAGCTGTTCTATCAGATGAGAAATGCTGATTTCTTACCCGATCAGTTTACATGTTCAATGTTAATGAGTGCCTATTCTAACTTGCGAGACTTGGACAAGGGTAAGCAGGTTTTGGCCTTTTGTTTCAAGATGGGATTTGTTTATAATAGCATTGTATCCAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGATGATTCTGTTCAGCTCTTTAAGGAACAAGATCAATGGGATTCAGCTCTATGCAATTCCATGATTTCAGGCTATGCTAGACATGATTTAGGGGCAGATGCTTTGCGACTTTTTGTGCTGACCTTGCGGAAGAATATCAGGCCAACAAAATACATGGTTAGCTCTCTTCTGAGTTCTGTTTCGGTTTTGTTACCAGTTGAAGTGGGTAAACTAATCCATTCTTTGGTTCCTAAACTGGGTTTTGAGTCAGATGCAGTTGTTGCCAATTCACTTGTTGACATGTATGCCAAATTTGGGTTTATTGACGATGCCTTGAATATCTTCAATGAAATGAAAATTAAAGATTTGGTATCATGGAACACTATACTGATGGGACTGACTTACAATGGGCGAGTGTCTTCTACCATGGACCACTTTAGGGAATTATTGACTAGAGAAGACATGCTTCCAGATCGAATTACACTAACTGCAGTTCTACTTGCATGCAACTATGGATTATTGGTTGATGAAGGAATTGAAATATTTTCATTAATGGAGATTAAATTTGGAGTAAAATCAGGTGAAGAACATTATGAATGTGTTGTGGCGATGTTGAGTAAAGCTGGCAAGCTCAAAGAAGCCATTGATATCATAGAAACAATGCCATATAGAATTACCTCTGGCATTTGGAGGTCAATTCTTTCTGCATGTGCAGTTTATGGAGACTTACAAATTATAGAAGGAGTTGCAAAGAAAATAATCGATAGTGAAACACAAACATCCTTACCTTACTTGGTATTGGCTCAAACATATCAAATGAGAGGTAGATGGGAGACCATGGTTCGAATGAGGAAGGCTGTGGAAATTATAGGTACTAAAGAGGTCATCGGACATAGTTGGATTGGAATTAAAAATAACTTATACACTTTTTCATCGAATCAGTTACAACATTATGGTGGCAAGGATCTTTATCTACTGTTGAATTTACTGGTCTGGGAGATGGAGAATGAAGGCTATTTCTAA 1893 0.3946 MYPFFKHTQGSYFSLSYCSLLLSHSLSQKSLNFVKLVHANFIKLGLNTYTYLGNRCVNLYSELGHINDALKVFDDISHKNTTSWNICLKALLKSGQLGKACHVFGAMPARDVVSWNSMISGYASCGFLSHAWEIFVEMQGTGVKPSEFTFSIVMSLVPSPSHAKQIHCRMIRSGMDLDNVVLGNSLITMYGKIGLVEYAFGVIMTMKHFDVISWNSLIWACQRAGNHEQAFELFYQMRNADFLPDQFTCSMLMSAYSNLRDLDKGKQVLAFCFKMGFVYNSIVSSAAIDLFSKCNRLDDSVQLFKEQDQWDSALCNSMISGYARHDLGADALRLFVLTLRKNIRPTKYMVSSLLSSVSVLLPVEVGKLIHSLVPKLGFESDAVVANSLVDMYAKFGFIDDALNIFNEMKIKDLVSWNTILMGLTYNGRVSSTMDHFRELLTREDMLPDRITLTAVLLACNYGLLVDEGIEIFSLMEIKFGVKSGEEHYECVVAMLSKAGKLKEAIDIIETMPYRITSGIWRSILSACAVYGDLQIIEGVAKKIIDSETQTSLPYLVLAQTYQMRGRWETMVRMRKAVEIIGTKEVIGHSWIGIKNNLYTFSSNQLQHYGGKDLYLLLNLLVWEMENEGYF 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02346 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Vimu10g02346 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat 184 209 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat 414 440 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat 488 511 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat 315 339 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat 384 411 IPR002885 -
Vimu10g02346 630 NCBIfam pentatricopeptide repeat 212 245 IPR002885 -
Vimu10g02346 630 NCBIfam pentatricopeptide repeat 83 113 IPR002885 -
Vimu10g02346 630 NCBIfam pentatricopeptide repeat 385 413 IPR002885 -
Vimu10g02346 630 NCBIfam pentatricopeptide repeat 113 147 IPR002885 -
Vimu10g02346 630 Gene3D Tetratricopeptide repeat domain 274 360 IPR011990 GO:0005515
Vimu10g02346 630 Gene3D Tetratricopeptide repeat domain 464 596 IPR011990 GO:0005515
Vimu10g02346 630 Gene3D Tetratricopeptide repeat domain 34 157 IPR011990 GO:0005515
Vimu10g02346 630 Gene3D Tetratricopeptide repeat domain 363 463 IPR011990 GO:0005515
Vimu10g02346 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat family 110 154 IPR002885 -
Vimu10g02346 630 Pfam PPR repeat family 210 257 IPR002885 -
Vimu10g02346 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vimu10g02346 630 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 383 609 - -
Vimu10g02346 630 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 89 629 IPR046960 GO:0003723|GO:0009451
Vimu10g02346 630 Gene3D Tetratricopeptide repeat domain 158 273 IPR011990 GO:0005515
Vimu10g02346 630 FunFam Pentatricopeptide repeat-containing protein At3g49710 25 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02346 Vimu-Chr10 34253709 34256172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02346 100 629 Glycoside Hydrolase AT3G49170 31.041 1.19e-75 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02346 - - gmx:102663822 1040.41