Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02330 ATGGCACATTTGTATGAAATCCGAGAGAAACAAAGAGCTGGTGGCCCAGCCACCATACTCGCCATTGCCACTGCAAATCCATCCAACTGCATTTACCAATCTGACTTCACTGATTATTACTTTCGAGTCACCAAGAGCGATCACATGACCGATCTCAAGGCCAAGTTAAAGCGCATTTGTGAGAAGTCTATGATAGAGAAACGGTACATCCACCTGACTGAAAAAATGTTGAAAGAAAACCCCAACATAAGCACTTACGAGGAACCATCGTTGAATGCACGACAAGACATACTGGTTGAAGAGGTTCCTAAGCTTGGTGAGAAGGCAGCATCCAAAGCCTTAAAGGAATGGGGCAGGCCAAGATCAGATATTACTCATCTCATATTTTGCTCCACCTCGGGCGTAGACATGCCTGGTGCTGATTACCAACTTGTCAGACTCTTAGGCCTCGAACCATCCACCAAAAGGTTCATGTTATACCATCAAGGTTGTTTTGCTGGTGGCACCGTGCTTCGTCTCGCTAAAGATCTTGCTGAAAACAATGTTGGAGCACGCGTTCTCGTGGTGTGTTCTGAGATCACAGTTGTCACCTTTCGTGGACCCCGTGAAACACACTTGGACTCGTTGGTGGGACAAGCACTCTTCGGAGATGGAGCTTCATCAGTGATCGTGGGATCTGATCCTGACACAACCATCGAACGACCACTCTTTCACCTTGTTTCAGCATCGGAGACGATTCTTCCCAACTCTGAGGGGGCAATTGAAGGACACCTGCGTGAGGTGGGGCTAACCTTCCATCTTAAGGACAACGTTCCTCAGTTGATCGGAGATAACATAGAGAAAAGCCTTGAAGAAGCCTTTCACCCACTCGGGATCAGTGACTGGAACTCGTTGTTCTGGGTTGCGCACCCTGGTGGCCCTGCAATCTTGAAGCGGATAGAAGGAACGCTTGGGTTGAACCCTGATAAATTGAGAGCGACGAAACAGGTTCTGAAAGAGTATGGAAACATGTCGAGTGCATGTGTGTTGTTTATACTGGATGAGATGAGAAGATGGTCCTTGGAGGAAGGAAAATCAAGTACTGGTGAAGGATTGAAGTGGGGTGTTCTATATGGGTTTGGTCCAGGCTTGACCATGGAGACCATTGTTTTGCATAGCGTCGCCATAGACCCAAAGAACTAG 1182 0.4755 MAHLYEIREKQRAGGPATILAIATANPSNCIYQSDFTDYYFRVTKSDHMTDLKAKLKRICEKSMIEKRYIHLTEKMLKENPNISTYEEPSLNARQDILVEEVPKLGEKAASKALKEWGRPRSDITHLIFCSTSGVDMPGADYQLVRLLGLEPSTKRFMLYHQGCFAGGTVLRLAKDLAENNVGARVLVVCSEITVVTFRGPRETHLDSLVGQALFGDGASSVIVGSDPDTTIERPLFHLVSASETILPNSEGAIEGHLREVGLTFHLKDNVPQLIGDNIEKSLEEAFHPLGISDWNSLFWVAHPGGPAILKRIEGTLGLNPDKLRATKQVLKEYGNMSSACVLFILDEMRRWSLEEGKSSTGEGLKWGVLYGFGPGLTMETIVLHSVAIDPKN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02330 393 Gene3D - 236 390 IPR016039 GO:0016746
Vimu10g02330 393 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vimu10g02330 393 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Vimu10g02330 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 6 387 IPR011141 GO:0009058|GO:0016747
Vimu10g02330 393 CDD CHS_like 16 384 - -
Vimu10g02330 393 Pfam Chalcone and stilbene synthases, N-terminal domain 6 228 IPR001099 -
Vimu10g02330 393 Gene3D - 1 235 IPR016039 GO:0016746
Vimu10g02330 393 FunFam Chalcone synthase 1 236 388 - -
Vimu10g02330 393 Pfam Chalcone and stilbene synthases, C-terminal domain 239 387 IPR012328 -
Vimu10g02330 393 FunFam Chalcone synthase 2 1 235 - -
Vimu10g02330 393 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vimu10g02330 393 PIRSF PKS_III 3 389 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02330 Vimu-Chr10 33962574 33963994 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02330 K00660 - vvi:100263443 615.535