Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02306 ATGGCTGCGCTATCGTATCCACCTTTCTTCGCCCTTCAGAGAATTACTTCTACCGATGCCAACGCCAACGCTTTCTTCGTTCGTTCGCGCCCTTTTGTTCCGCCCTGGCCTCGCCTGCGACGACGTCGTTGCGCCCCCGCTCTCGTCGCCGTTGCCTCCGTTAAGGAAAATATCGGTCGTGTTCAAAAGCATTTCACTGACTTCACGAGCTTGAACTATTGGGTTGTTGCCGACTACTATCGTCTCGTGAACTCCGTCAACGCCTTCGAGCCTCAGATTAAGGCGCTCTCCGATGAACAGCTGGCCGCGAAGACCTCCGAGTTTCGCCGCCGCCTCGCGCGAGGGGCTACTCTTGCTGACATTCAAGCTGGTTTACTACTCTTTTATGCTGTTGCGTCATTGCTGGTTTCGTCTCTGAACTGTTTTTATGATAGAATCGTAATTAATGTTTCAGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGGAAACTTAGAATGCGTCATTTCGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACCGGGGAGGGTAAAACCTTGGTTTCCACACTAGCTGCTTATCTAAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTTAACGATTATTTAGCTCAGCGTGACGCTGAATGGATGGGACGCGTTCATCGTTTCTTAGGTCTATCTGTCGGTCTTATTCAGAGAGGAATGAATGCTGAAGAACGAAGAATAAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGATTTGATTACCTGCGAGATAATCTGGCTGGAAATCGTGACCAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGGAATTGTTGATGAAGTGGATTCTGTCTTGATAGACGAGGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTAAACAGGGCACTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACCGAGGAAGGAATTGCTCTTGCCGAAATGGCTTTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCAAGATTTGTGATTAATGCTATAAAAGCTAAAGAATTCTATCGTCCAGATGTGCAATACATTGTTAGAGATGGAAAGGCTTTGATTATCAATGAGCTGACAGGTAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATATCAGTCATTATTCAAGCTCTATCCGAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTTAGGATGCCAGTCATTGAAGTACCCACAAATCTTCCTAATATTCGAAAAGATTTACCAATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTGGACAAGGTCGGCCTGTCTTAGTTGGAACCACTAGTGTAGAAAATTCGGAACTTTTGTCTGGTATGCTTTGGGAATGGAATATTCCTCACAATGTTCTGAATGCTAGGCCCAAGTATGCTGCAAAAGAAGCAGAAGTTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCCGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGTTTACTTTCATTTTTGACACGGGAGGATCCAAATGTTGAACTTGCAGGGGAAGCTATTTCACAAATGGTGCTTCCAAAGATAACAGTTGGATCATCATCAATGGCCTTACTGGCTAAGACATCCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAAGCAAAATCTTTTATCTTGGAGGCTATTGAAATGAATCTTTCATATAGTTTGGAAGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGACCTACCCTCTTGGTCCAACTGTAGCACTTACCTATCTGTCAGTTTTGAAGGATTGTGAAGAACATTGTTTGAATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGACTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGGTGGGTAATTGCTAA 2241 0.4409 MAALSYPPFFALQRITSTDANANAFFVRSRPFVPPWPRLRRRRCAPALVAVASVKENIGRVQKHFTDFTSLNYWVVADYYRLVNSVNAFEPQIKALSDEQLAAKTSEFRRRLARGATLADIQAGLLLFYAVASLLVSSLNCFYDRIVINVSEAFAVVREAAWRKLRMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRINYRCDITYTNNSELGFDYLRDNLAGNRDQLVMRWPKPFHFGIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLKQGTHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVINAIKAKEFYRPDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFGQGRPVLVGTTSVENSELLSGMLWEWNIPHNVLNARPKYAAKEAEVVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELAGEAISQMVLPKITVGSSSMALLAKTSLMAKYVSKSEGKSWTYQKAKSFILEAIEMNLSYSLEELEKLANEESETYPLGPTVALTYLSVLKDCEEHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQVGNC 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02306 746 Pfam SecA preprotein cross-linking domain 328 428 IPR011130 GO:0016020|GO:0017038
Vimu10g02306 746 CDD DEXDc_SecA 100 484 - -
Vimu10g02306 746 Pfam SecA DEAD-like domain 76 471 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vimu10g02306 746 Hamap Protein translocase subunit SecA [secA]. 60 742 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 SMART SecA_DEAD_2 65 472 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vimu10g02306 746 SMART SecA_PP_bind_2 317 428 IPR011130 GO:0016020|GO:0017038
Vimu10g02306 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 338 IPR014001 -
Vimu10g02306 746 Gene3D - 487 745 IPR027417 -
Vimu10g02306 746 ProSiteProfiles SecA family profile. 61 746 IPR014018 -
Vimu10g02306 746 SUPERFAMILY Pre-protein crosslinking domain of SecA 316 437 IPR036670 GO:0016020|GO:0017038
Vimu10g02306 746 Gene3D - 80 485 IPR027417 -
Vimu10g02306 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 743 IPR027417 -
Vimu10g02306 746 PRINTS SecA protein signature 149 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PRINTS SecA protein signature 446 463 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PRINTS SecA protein signature 256 276 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PRINTS SecA protein signature 187 201 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PRINTS SecA protein signature 203 213 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PRINTS SecA protein signature 409 431 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PRINTS SecA protein signature 483 496 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 50 742 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vimu10g02306 746 FunFam Protein translocase subunit SecA 144 329 - -
Vimu10g02306 746 Coils Coil 667 687 - -
Vimu10g02306 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 485 IPR027417 -
Vimu10g02306 746 Gene3D - 318 438 - -
Vimu10g02306 746 FunFam Preprotein translocase SecA subunit 318 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02306 Vimu-Chr10 33699649 33709511 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02306 K03070 - gmx:100793437 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02306 10 33699649 33709511 Vimu10g02306 10 33699649 33709511 ECH