Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02305 ATGGAGCTGCCGGAGTGCCCGGTATGCCTTCAATCCTTCGACGACCGCGAAGCAATTCCTCGGGTCTTGTCATGTGGACACTCCGTTTGCGAAGCTTGTCTCGCGGAGCTTCCGCAACGGTACCCGAATACTATTCGGTGCCCCGCTTGCACCCAACTCGTGAAGTATCCTTCTCAACAAGGCCCTTCTTCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCGCTCCAACACTCCTCTTCTTCTTCTTCTAATCATTCCCACAAACACAACCAACGGTCCACGGTCAATTCTTGTAGCGATCACTCTTCGTTCTGGTCCCCTGAGTTCTATGATGCATGGAAGAATTGGATTCTGCCGCTCGACGCTGTTTTAACTGACGACCATTGTCTTGGCCGCTTCAGTTCGTCCAAGGGTAGGGTTTGTTTCGGAGTTAAGCGATGCGTGAGTCTCGCTCCGATTGTTTGTTTCTCTCCTGGGAATGACTCTAAGTTTAGGTTTAGTTATGTTGCATGGGTGATTAAGTGTTTGGAGGGGATGAGCGAGGCTGCGAGAGAGGAGTTAGCATGGATTCTTGAAGCTTCCGTGAGACAGAGTAGGGTGTGTGGGGTTTTTGGGTTGTGGAGTGAAGGGGTGGAGGGACCTCTATATATGGTGTGTGAGAGGCAAAGTGGTAATCTTTTAGACAAGTTTGGTGAATTGGGAAATGGGTTTGTTGGTAGGAATGAGGGTGGTTTGGAGTTGGACAGTGGTGGGATTTTTAATTTTTTAATGATTGGGAAAGGTATATGTGAAGCTGTGCTTTCTTTGCATTTGGAAGGTTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTCGGTGGGATTTGTGTTGATTTGAATGAGGTGTTGGGAATGGGAAGGCGGTTGCATGCTGTTTCCGGTAAACATGAGAAAGAAGCAATGTCTAAAGATTGCTTGGAAAATGAGATTTTTGTAAGTCCTGAGGTTTTGTATGAGTTGTTGCACATGAGGAGATCTGCTCGAGATAGTGGCCATTTGAAATATCCAATTGGGTATGGCTCAGATGTGTGGTCATTGGCCCGTGTACTGCTATGGCTTCTTATTGGAAATGTGCTGCCCCGGAATACATTGGAAATGAATGAAGAGAGTGATGGCGATAGCACAGCTAGTTATGTGTGTTGGGTGGAGAAAGTTGGTTCTGTTTTGGAAGACAAACTAGGCCCTGAGTATCTGTCACTGGGGAAGACTCTTTGCAAATGTTTGGACGTCAATCCAGTAAACCGTCCAGATGTGATAGATGTAAGGAAGTGCATTCAGGATAAGTTAGTCAAACCTCAATTTGAATTTCTGGGCAACTTAGAGGTCACAATAAGTAAGGACAGTACAGGTCGCTGTTTGGTTCTAGGGGAGCTGTCTCTGTTGCCTAAGGAATGGTCTGACGAACCAAGAGAGCATGAGTTGCGGGAGAAACAAATTGGTGGTCATCCAAATTTTGTTCAAGATGGCCAAGACAAGTCTGACGAGGACTCTGCTGCTGGTTTATCTGGGGGATTAACTGAACTCAAAGATCTGCGAGGCCATCTTGATTGTGTCAGTGGATTGGCTGTTGGAGGCGGGTATTTGTTCAGCTCCTCATTTGACAAAACTGTTCGCGTATGGTCCTTGCAGGACCTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATTTGGGGAATTGCTGCCCCTCTTAGGCAAGATCCCTTAAGGAAATGGAATGAGAACAAGGATTGGCGTTTTAGTGGTATACACTCCTTGGCTGTTTCCAAAAATCATTCTATTTACACTGGAAGCGGAGATAGAACAATCAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGTCATAGATCTGTAGTTTCCACACTTGCTGTTTGTGATGAGGTTCTTTATAGTGGTAGCTGGGATGGTACAGTTCGGTTGTGGAGTCTAAATGACCACTGTCCATTGACAGTTCTGGGGGAAGATATGCCTGCAGATATGAGGTCTATCATGGCTATTACTGTAGATAGGCATTTGCTTGTTGCAGCACATGAGAATGGATCCATAAAGGTCTGGAGGAATGATGTGTTCATGAATTCCAAAACATTGCATAATGGGTCCATTTTTGCAATGAGTATGCAGGGAAAATGTCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGACGAGTTTGAACTGGATGTCAAACCATATGGATCCATTCCACACAGTTCTGTTGTTACAGCTATATTATACAGCCAGGGAAAACTGTACGTCGGATATGCTGACAAGTCTATTAAGGCAGATATGATCAACCGGGAAATATTGTCCTTTTCACTCTCAATTATTTGGCAACATGACTTCTTATTGTGTTCTGAAAGGAAAGCCAATGTCTGA 2538 0.4452 MELPECPVCLQSFDDREAIPRVLSCGHSVCEACLAELPQRYPNTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQHSSSSSSNHSHKHNQRSTVNSCSDHSSFWSPEFYDAWKNWILPLDAVLTDDHCLGRFSSSKGRVCFGVKRCVSLAPIVCFSPGNDSKFRFSYVAWVIKCLEGMSEAAREELAWILEASVRQSRVCGVFGLWSEGVEGPLYMVCERQSGNLLDKFGELGNGFVGRNEGGLELDSGGIFNFLMIGKGICEAVLSLHLEGLVAGCLGLSCFSFDELGGICVDLNEVLGMGRRLHAVSGKHEKEAMSKDCLENEIFVSPEVLYELLHMRRSARDSGHLKYPIGYGSDVWSLARVLLWLLIGNVLPRNTLEMNEESDGDSTASYVCWVEKVGSVLEDKLGPEYLSLGKTLCKCLDVNPVNRPDVIDVRKCIQDKLVKPQFEFLGNLEVTISKDSTGRCLVLGELSLLPKEWSDEPREHELREKQIGGHPNFVQDGQDKSDEDSAAGLSGGLTELKDLRGHLDCVSGLAVGGGYLFSSSFDKTVRVWSLQDLSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWNENKDWRFSGIHSLAVSKNHSIYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHCPLTVLGEDMPADMRSIMAITVDRHLLVAAHENGSIKVWRNDVFMNSKTLHNGSIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKPYGSIPHSSVVTAILYSQGKLYVGYADKSIKADMINREILSFSLSIIWQHDFLLCSERKANV 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02305 845 CDD RING-HC_TRIM32_C-VII 4 53 - -
Vimu10g02305 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vimu10g02305 845 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 692 - -
Vimu10g02305 845 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Vimu10g02305 845 SMART ring_2 6 50 IPR001841 -
Vimu10g02305 845 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 568 IPR001680 GO:0005515
Vimu10g02305 845 Pfam WD domain, G-beta repeat 657 690 IPR001680 GO:0005515
Vimu10g02305 845 Pfam WD domain, G-beta repeat 526 559 IPR001680 GO:0005515
Vimu10g02305 845 MobiDBLite consensus disorder prediction 488 517 - -
Vimu10g02305 845 SUPERFAMILY WD40 repeat-like 524 814 IPR036322 GO:0005515
Vimu10g02305 845 SUPERFAMILY Protein kinase-like (PK-like) 197 451 IPR011009 -
Vimu10g02305 845 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 692 IPR001680 GO:0005515
Vimu10g02305 845 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vimu10g02305 845 SUPERFAMILY RING/U-box 5 59 - -
Vimu10g02305 845 Gene3D Transferase(Phosphotransferase) domain 1 255 453 - -
Vimu10g02305 845 Gene3D - 502 606 IPR015943 GO:0005515
Vimu10g02305 845 Pfam RING-type zinc-finger 6 48 IPR027370 -
Vimu10g02305 845 SMART WD40_4 735 772 IPR001680 GO:0005515
Vimu10g02305 845 SMART WD40_4 522 559 IPR001680 GO:0005515
Vimu10g02305 845 SMART WD40_4 608 650 IPR001680 GO:0005515
Vimu10g02305 845 SMART WD40_4 653 690 IPR001680 GO:0005515
Vimu10g02305 845 SMART WD40_4 693 734 IPR001680 GO:0005515
Vimu10g02305 845 SMART WD40_4 562 602 IPR001680 GO:0005515
Vimu10g02305 845 Gene3D - 608 841 IPR015943 GO:0005515
Vimu10g02305 845 PANTHER - 1 814 IPR044715 -
Vimu10g02305 845 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Vimu10g02305 845 PRINTS G protein beta WD-40 repeat signature 637 651 IPR020472 -
Vimu10g02305 845 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02305 Vimu-Chr10 33693097 33697355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02305 626 775 Acyl Lipid Metabolism Gene Families AT3G18860 28.655 9.37e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02305 - K03070 gmx:100793437 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02305 10 33693097 33697355 Vimu10g02305 10 33693097 33697355 ECH