Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02295 ATGGATGTAGGTTGCATCATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTGCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTAGGCTTATGGTTGTTGGACTTCTCTGGTCCACGTTTTCTGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACCCTTCGTGTTGGTGATCGGATTATTGTAGAAAAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAACATTTAAGGATCCAACACAGTTATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCGGGAAGATTTCATAGCACAACCACCGGCATACACAATTCCTTTAACCGTGAGATCCCTGTTCGTTGTTACGACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGTAA 561 0.4296 MDVGCIMSLLRPSAIYNFVTSYPALRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKASYYIKNPSIHDIITFKDPTQLYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQREDFIAQPPAYTIPLTVRSLFVVTTVPNDHVYVLGDNRNNSYDSHVW 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02295 186 NCBIfam signal peptidase I 47 185 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g02295 186 CDD S26_SPase_I 59 186 IPR019533 GO:0004252|GO:0006465
Vimu10g02295 186 ProSitePatterns Signal peptidases I signature 3. 170 183 IPR019758 GO:0004252|GO:0016020
Vimu10g02295 186 ProSitePatterns Signal peptidases I serine active site. 65 72 IPR019756 GO:0004252|GO:0016020
Vimu10g02295 186 Gene3D Umud Fragment, subunit A 65 186 - -
Vimu10g02295 186 PANTHER SIGNAL PEPTIDASE I 43 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g02295 186 SUPERFAMILY LexA/Signal peptidase 57 186 IPR036286 -
Vimu10g02295 186 Pfam Signal peptidase, peptidase S26 45 186 IPR019533 GO:0004252|GO:0006465
Vimu10g02295 186 PRINTS Bacterial leader peptidase 1 (S26A) family signature 113 125 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g02295 186 PRINTS Bacterial leader peptidase 1 (S26A) family signature 56 72 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g02295 186 PRINTS Bacterial leader peptidase 1 (S26A) family signature 165 184 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02295 Vimu-Chr10 33558172 33561147 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02295 K03100 - gmx:100306121 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02295 10 33558172 33561147 Vimu10g02295 10 33558172 33561147 ECH