Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02285 ATGACCACGAAGAAGAGAAAAAGATCCCCGAAACTGATCCCACCCACTCCCTCAACGCCCCCAACTCCCCAAACCCAGGCCCGTCATTCTCTCAACACCGCAAAAGCCCGGGGCTGGGCCCCTCTCAACTTGACCCAGGCCGAACTCTCTCTGCCACTCACCTTTCCCACGGGCCAAACCTTCCGCTGGAAAAACACCGCTCCTCTAGAATACACAGGCGTCGTTGGGCCCCACCTCGTAACCCTCAAACACCTCCAAAACGGCGACGTTTGCTACTGCCTCCACTCCCACTCTCACCCCGAAAAAGCCGAAACCGCCTTGCTAGATTTCCTTAACGCCGCCGTTTCTCTCGCCGGCTTATGGAAAGCGTTTTCCGCTTCCGATGCGAGGTTCGCGGCGCTAGCGCGCCACTTGAGCGGTGCGAGGGTGCTCCGGCAAGACCCTTTCGAGTGTTTGATTCAGTTTCTGTGCTCTTCCAATAACAACATTGCACGAATCACGAAGATGGTTGATCACGTGTCGTCCCTGGGAGTGCACGTGGGAGACGTTGGAGGGTTTCAGTTTCACGTTTTCCCTTCTTTGGAGCAACTTTCCTCCGTCTCAGAGCAACAACTCAGAGACGCGGGTTTCGGTTACAGGTTCATCACTAAATATATAATCGGAACGGTTAATGTTTTGCGATCAAAACCTGGTGGAGGCGAAGAGTGGCTTCGTTCTCTGCGTAAGCTGGATCTTCCAGATGTTATATCTGCACTTTCTACGTTACCTGGTGTGGGCCCTAAAGTGGCTGCTTGCATTGCTCTCTTCTCGCTTGATCAACACGATGCCGTTCCTGTTGACACTCACGTTTGGCGGATTGCCACCAAGTATCTCTTACCTGAGCTTGCAGGTTCGCAGTTGACCCCAAAGCTCTGTAATCGTGTTGCAGAGGCATTTGTTACCAAGTATGGTAAATATGCTGGGTGGGCGCAGACTCTATTGTTCATAGCTGAATTACCTTCACAGAATGCCATCATACCTTCACATTTGAGGACTATCAAACAACGGAATCCTGCAAAGGTAGAAGATGGCGAAGAAGAAGTTGTGAGATCTACATATGACTCTGGGGACATAAATGTACGTGACTTAGGTGTGACATGCTGCTGTCAAGAATTCATGAGAGTTGAGACTGGTGCTTCCTCTGACATAACTGAAATCCTGGATAAATAG 1209 0.5087 MTTKKRKRSPKLIPPTPSTPPTPQTQARHSLNTAKARGWAPLNLTQAELSLPLTFPTGQTFRWKNTAPLEYTGVVGPHLVTLKHLQNGDVCYCLHSHSHPEKAETALLDFLNAAVSLAGLWKAFSASDARFAALARHLSGARVLRQDPFECLIQFLCSSNNNIARITKMVDHVSSLGVHVGDVGGFQFHVFPSLEQLSSVSEQQLRDAGFGYRFITKYIIGTVNVLRSKPGGGEEWLRSLRKLDLPDVISALSTLPGVGPKVAACIALFSLDQHDAVPVDTHVWRIATKYLLPELAGSQLTPKLCNRVAEAFVTKYGKYAGWAQTLLFIAELPSQNAIIPSHLRTIKQRNPAKVEDGEEEVVRSTYDSGDINVRDLGVTCCCQEFMRVETGASSDITEILDK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02285 402 Gene3D Hypothetical protein; domain 2 147 273 - -
Vimu10g02285 402 CDD ENDO3c 149 329 IPR003265 GO:0006284
Vimu10g02285 402 Gene3D - 25 111 - -
Vimu10g02285 402 SMART endo3end 157 332 IPR003265 GO:0006284
Vimu10g02285 402 Pfam HhH-GPD superfamily base excision DNA repair protein 153 290 IPR003265 GO:0006284
Vimu10g02285 402 SUPERFAMILY TATA-box binding protein-like 35 146 - -
Vimu10g02285 402 MobiDBLite consensus disorder prediction 1 29 - -
Vimu10g02285 402 FunFam N-glycosylase/DNA lyase OGG1 270 332 - -
Vimu10g02285 402 FunFam N-glycosylase/DNA lyase 147 273 - -
Vimu10g02285 402 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 42 152 IPR012904 GO:0003684|GO:0006289|GO:0008534
Vimu10g02285 402 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 26 348 - -
Vimu10g02285 402 SUPERFAMILY DNA-glycosylase 147 330 IPR011257 GO:0003824|GO:0006281
Vimu10g02285 402 Gene3D - 120 332 IPR023170 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02285 K03660 - gmx:100789749 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02285 10 33445112 33447222 Vimu10g02285 10 33445112 33447222 ECH