Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02284 ATGGCGGAGAAAAACTTCGTATCTAAAATCCTAATGACTGCAAGGAAAGAAGGACAATGGAGGACACGGTGTTTTCCGTTCGCTTTCATTTTAACGGCGTTTATTGGTGGCGCCTATGGTGGCAATGTCACCTACGACGGAAGATCCTTAATCATTGATGGAGAGCACAGAATCCTCTTCTCCGGTTCAATTCATTATCCTCGCAGCACTCCTCAGATGTGGCCTAATTTAATTGCTAAAGCTAAGGAAGGTGGATTAGATGTCATACAAACTTACGTGTTTTGGAACCTTCACGAACCTCAACAAGGCCAGTATAACTTTAGAGGAAGGCGTAATATAGTGAGATTCGTTAAGGAAATTCAAGCACAGGGTTTATATGTAACACTCAGAATTGGACCATACATTGAGAGTGAATGCACATACGGGGGTCTACCAATTTGGTTACATGATATTCCGGGTATCGTATTCAGATCTGACAATGAGCAATTCAAGTTTCACATGCAAAGGTTCGCTACCAAAATAGTCAACGTGATGAAATCGGCTAATCTTTATGCTTCACAAGGAGGACCTATCATACTATCACAGATTGAGAACGAATATGGGAACGTTCAAGGGGCGTTTCACGAGAAAGGACTATCTTATATTCGTTGGGCCGCCCAGATGGCCGTGGGACTCCAAACTGGTGTGCCTTGGGTGATGTGCAAGCAAGATAATGCTCCTGATCCCGTGTACCATGGAGGAACCAATTTCGACAGGATAGCCTCCGCTTTCGTAACGACATCCTATTATGACGAAGCTCCACTGGATGAATATGCAGGTTTGATTAGACAACCAAAATGGGGCCATCTTAAGGAGCTACATGCAGCAATCAAGTCATGTTCAAAATCTCTACTTTATGGTACTCAAACTAGCTTCAGCTTGGGCTCACGACAAAACGCTTATGTTTTCAAAAGTAACTCAACAGAATGTGCTGCCTTCCTGGAAAATAATGAAGATCGAACTGTCACAGTTCAATTGCAAAATATTTCATACCAGCTACCACCCAAATCAATCAGTATTCTACCAGACTGCAAGAATGTGGCCTTTAACACTGCCAAGGTACGCACACAAAATGACAGATCAATGAAGTCATATTTACGGTTCAATTCAGCAGAAAAATGGAAAGTGTACAAAGAAGCCATCCCGAGCTTTGACGATACTTCATTAAGAGCAAATACACTTTTGGATCAAATCAGCACAGCAAAAGATACATCTGACTATATGTGGTTTAATGACAATTCTCCTAATAATGCTCAATCCATTCTAAGTGCATACAGCCAAGGACATGTTTTGCATACCTTCATCAACGGAAATTTAGTAGGTAAACCTCAACCTCACAGAAATGCGTCTTTTGTCATGGAAAACAGACTCAATCTCATAAAAGGGATGAACAATGTTTCTTTCCTCAGTGCAACAGTTGGACTGCCGAACTCAGGAGCATATCTAGAGCACAAAGTCGCCGGTTTAAGTAGAGTGAAAGTTCAAGGCCAAGATTTCACCAATCAAGCATGGGGATATCAGGTTGGTTTGTTGGGAGAAAAATTGCAAATCTACACAGCTAGTGGATCAAGTAAAGTTCAATGGGAAAGGTTTCAAAGCTCAACGAAGCCACTCACATGGTATAAGACCACATTTGATGCACCAGAGGGAAACGATCCGATAGTGCTTAACCTTGAGTCCATGGGAAAGGGTTATACTTGGATTAATGGCCAAGGTATAGGCCGATATTGGGTATCACATACCCCGATCCCTCCTAAAATCTACAGGGAACCTACTAGTTCTGCTAGAAGAAGAAACTGGGAACCCACTTGA 1851 0.4214 MAEKNFVSKILMTARKEGQWRTRCFPFAFILTAFIGGAYGGNVTYDGRSLIIDGEHRILFSGSIHYPRSTPQMWPNLIAKAKEGGLDVIQTYVFWNLHEPQQGQYNFRGRRNIVRFVKEIQAQGLYVTLRIGPYIESECTYGGLPIWLHDIPGIVFRSDNEQFKFHMQRFATKIVNVMKSANLYASQGGPIILSQIENEYGNVQGAFHEKGLSYIRWAAQMAVGLQTGVPWVMCKQDNAPDPVYHGGTNFDRIASAFVTTSYYDEAPLDEYAGLIRQPKWGHLKELHAAIKSCSKSLLYGTQTSFSLGSRQNAYVFKSNSTECAAFLENNEDRTVTVQLQNISYQLPPKSISILPDCKNVAFNTAKVRTQNDRSMKSYLRFNSAEKWKVYKEAIPSFDDTSLRANTLLDQISTAKDTSDYMWFNDNSPNNAQSILSAYSQGHVLHTFINGNLVGKPQPHRNASFVMENRLNLIKGMNNVSFLSATVGLPNSGAYLEHKVAGLSRVKVQGQDFTNQAWGYQVGLLGEKLQIYTASGSSKVQWERFQSSTKPLTWYKTTFDAPEGNDPIVLNLESMGKGYTWINGQGIGRYWVSHTPIPPKIYREPTSSARRRNWEPT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02284 616 SUPERFAMILY Galactose-binding domain-like 351 498 IPR008979 -
Vimu10g02284 616 Pfam Glycosyl hydrolases family 35 244 289 IPR031330 -
Vimu10g02284 616 Pfam Glycosyl hydrolases family 35 49 240 IPR031330 -
Vimu10g02284 616 Gene3D - 244 390 - -
Vimu10g02284 616 FunFam Beta-galactosidase 242 369 - -
Vimu10g02284 616 FunFam Beta-galactosidase 39 244 - -
Vimu10g02284 616 Pfam Beta-sandwich domain in beta galactosidase 297 367 IPR041392 -
Vimu10g02284 616 SUPERFAMILY Galactose-binding domain-like 516 595 IPR008979 -
Vimu10g02284 616 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 188 200 IPR019801 GO:0004553|GO:0005975
Vimu10g02284 616 Gene3D Glycosidases 40 243 - -
Vimu10g02284 616 SUPERFAMILY (Trans)glycosidases 40 293 IPR017853 -
Vimu10g02284 616 Gene3D - 522 605 - -
Vimu10g02284 616 PANTHER BETA-GALACTOSIDASE RELATED 243 595 IPR001944 GO:0004553|GO:0005975
Vimu10g02284 616 PRINTS Glycosyl hydrolase family 35 signature 129 148 IPR001944 GO:0004553|GO:0005975
Vimu10g02284 616 PRINTS Glycosyl hydrolase family 35 signature 53 70 IPR001944 GO:0004553|GO:0005975
Vimu10g02284 616 PRINTS Glycosyl hydrolase family 35 signature 576 592 IPR001944 GO:0004553|GO:0005975
Vimu10g02284 616 PRINTS Glycosyl hydrolase family 35 signature 549 563 IPR001944 GO:0004553|GO:0005975
Vimu10g02284 616 PRINTS Glycosyl hydrolase family 35 signature 186 201 IPR001944 GO:0004553|GO:0005975
Vimu10g02284 616 PRINTS Glycosyl hydrolase family 35 signature 74 92 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02284 Vimu-Chr10 33434430 33444395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02284 38 590 Glycoside Hydrolase AT2G28470 43.944 8.46e-171 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02284 - - pvu:PHAVU_009G127500g 1005.36