Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02279 ATGAAATTCCGTTTCTCCATCCTGCTCCTATCAATCCTCCTCGCAGTCTCGGTGGCGGTTTCTGTCGCCGAGCCTACTCCCTCCGCCGCCTACAACCGCGTGCTGTTTCCCGACCGGAGATGCCAGAGGGCGATGTCGGAGAACAGCACAAGGCTCGGCGCGTCACCGGCGGCGGCGGAGTGCGAGGTGTGGAGCGAGGCTTGTTCGGAGGCGGTGCTGAAAGTAGCGCTGCAGTCGGAGACAGCGGAGTGGCTGAGAGGTATTCGGCGGAAGATCCACGCAAATCCTGAGTTGGCGTTTGAGGAAATCGAGACGAGTCGCTTGGTGAGAGAGGAGTTGGATCTGATGGAAGTTAACTATCGGTATCCCCTCGCGAAGACCGGTATTCGAGCTTGGATCGGCACTGGTGGTCCTCCTTTTGTTGCCATCAGAGCTGACATGGACGCACTTCCCATTCAGGAAGCTGTGGAGTGGGAGCACAGGTCTAAAGTTGCCGGCAAAATGCATGCTTGTGGGCACGACGCACACGTTGCCATGCTTCTTGGCGCTGCCAAGATCTTGAAAACTCGAGAGCATCTATTAAAGGACATGAAGTGTGAGATGATTGGAAAGTTGAATTTAGAAGGTGGATGTGATGTGGGAACTGTAATTCTGATATTCCAGCCAGCTGAAGAAGCTGGAAATGGAGCAAAACGAATGATGCAAGATGGTGCTTTGGAGGACGTGGAAGCAATATTTGCAGCTCATGTATCCCATGAACATCCAACTGGAATAATCGGGTCAAGGCCTGGGCCCCTCCTTGCTGGTTGTGGGTTTTTCAGAGCCGTCATTAGAGGCAAAAAGGGTTTTGCTGCCGATCCTCACCGTTCTGTTGATCCTGTTTTGGCTGCTTCGGCTTCTGTTATCAGCTTACAGGGCATTGTCTCCCGCGAATCAAATCCACTAGATTCTCAGGTTGTCTCTGTAACTTCGTTTAATGGAGGCAACAATCTCGACATGATACCAGACACAGTGGTTCTCGGTGGGACTTTCAGAGCGTTCTCTAACACCAGCTTTTACCAGTTACTTGAAAGAATAGAACAGGTGATTGTTGAACAGGCAAGTGTGTACAGATGCTGGGCAGAAGTGGACTTCTTTGAAAAGGAGTACACGATTTATCCTCCAACAGTAAATGATGAGAGAATGTATGAGCATGTGAAGAAGAAGAATTTCAGGGTAGTTCCACCTATGATGGGTGCTGAAGATTTCTCCTTCTACTCCGAGGTGGTTCCCTCAGCTTTCTTCTACATAGGGATAAGGAATGAAACATTGGGATCTACTCATACGGGACATTCTCCCTATTTCATGATTGATGAAGACGTTCTACCAATAGGTGCTGCTACTCATGCCACTATTGCAGAGAGGTATCTCATTGAACATGACTAA 1425 0.4968 MKFRFSILLLSILLAVSVAVSVAEPTPSAAYNRVLFPDRRCQRAMSENSTRLGASPAAAECEVWSEACSEAVLKVALQSETAEWLRGIRRKIHANPELAFEEIETSRLVREELDLMEVNYRYPLAKTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEHRSKVAGKMHACGHDAHVAMLLGAAKILKTREHLLKDMKCEMIGKLNLEGGCDVGTVILIFQPAEEAGNGAKRMMQDGALEDVEAIFAAHVSHEHPTGIIGSRPGPLLAGCGFFRAVIRGKKGFAADPHRSVDPVLAASASVISLQGIVSRESNPLDSQVVSVTSFNGGNNLDMIPDTVVLGGTFRAFSNTSFYQLLERIEQVIVEQASVYRCWAEVDFFEKEYTIYPPTVNDERMYEHVKKKNFRVVPPMMGAEDFSFYSEVVPSAFFYIGIRNETLGSTHTGHSPYFMIDEDVLPIGAATHATIAERYLIEHD 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02279 474 PANTHER PEPTIDASE M20 FAMILY MEMBER 65 473 IPR017439 GO:0016787
Vimu10g02279 474 PIRSF Amidohydrol_AmhX 73 474 IPR017439 GO:0016787
Vimu10g02279 474 NCBIfam amidohydrolase 86 458 IPR017439 GO:0016787
Vimu10g02279 474 SUPERFAMILY Bacterial exopeptidase dimerisation domain 269 378 IPR036264 -
Vimu10g02279 474 Pfam Peptidase family M20/M25/M40 142 467 IPR002933 GO:0016787
Vimu10g02279 474 Gene3D - 268 386 - -
Vimu10g02279 474 CDD M20_IAA_Hyd 85 470 IPR044757 GO:0009850|GO:0016787
Vimu10g02279 474 FunFam N-acetyldiaminopimelate deacetylase 268 386 - -
Vimu10g02279 474 SUPERFAMILY Zn-dependent exopeptidases 78 472 - -
Vimu10g02279 474 Gene3D Zn peptidases 87 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02279 Vimu-Chr10 33323009 33330277 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02279 K21604 - gmx:100785666 784.252