Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02276 ATGTCCAAAATATCTGAGAAACATAGCGCACGTGTCATGCGGTGTTCTTACGGGGTTTCTAACTCCTACAAAAACCCCTCTCGTGACCTTCTCTTACACCTCAATTGCTTTCACAGCTTCCCTTTCAAAGGAACAATGGCGCGTAGGGTTTCGATTTGCTCCTTCTTCTTCGTCTTCGCACTTTCTCTTATCGCCTCTCAGATCTCTGCGGAGGAGTCCTCTGAGACTAAGGAATTCGTACTCACACTGGATCACTCCAACTTTCACGACACTATCAGCAAGCACGATTTCATCGTTGTCGAGTTCTACGCTCCATGGTGTGGCCACTGCAAGAATCTTGCTCCTGAGTATGAGAAAGCTGCTTCTATCTTGAGCAGTCATGATCCTCCGATTGTTTTGGCTAAAGTTGACGCCAATGAAGAGAAGAACAAAGCTCTTGCATCGGAATATGATGTTAAGGGATACCCCACACTTAAGATTGTGAGGAATGGGGGAAAGAATGTTCAGGAGTACAAAGGTCCCCGTGAAGCCGATGGCATCGTTGATTATTTGAAGAGACAGAGTGGTCCTGCTTCAACTGAAATTAAATCTGCCGATGAAGCTACAGCTTTTATTGGTGAAAATAAAGTTGTTATTATTGGAATTTTCCCGAAATTTTCTGGCGAGGAGTTTGATAACTTTACGGCCCTAGCAGAGAAGTTGCGTGCTGATTATGACTTTGGTCACACCCTGAATGCTAAACACCTTCCAAGAGGTGAATCATCAGTCGCTGGCCCTGTAATTAGGTTATTCAAGCCGTTTGATGAACTTTTTGTTGACTCCAAGGATTTCCATGTGGATACTCTAGAGAAATTTGTTGAAGAGTCCAGTACTCCTGTCGTTACTGTGTTTAACAATGATCCTAGCAATCACCCTTTTGTTGTCAAATTCTTCAACAGCCCCAATGCAAAGGCAATGTTGTTCATCAACTTCACTGCTGAAAGTGCTGAATCTTTCAAATCAAAATACCGTGAAGCTGCTGAGCAATTTAAACAACAGGGTGTAAGCTTTCTGGTTGGAGATGTAGAGTCTAGTCAAGGAGCTTTCCAGTACTTTGGACTGAAGGAAGAACAAGTACCTCTAATTATCATTCAACATAATGACGGGAAGAAATATTTTAAGCCCAATTTGGAAGCCGAACACATTCCAACTTGGTTGAAGGCATACAAGGAGGGTAACATTGCACCATATGTGAAATCTGAACCTGTTCCTGAAACTAACAATGAACCAGTTAAAGTGGTAGTTGGGGAAAGTCTCCAGGACATCGTTTTCAAGTCTGGGAAGAACGTTCTGCTGGAGTTTTACGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCTATATTGGACGAAGTTGCTATCTCATATCAAAATGATGCTAATGTTATCATTGCCAAACTGGATGCAACAGCCAACGATATCCCAGGTGATACCTTTGATGTCCAAGGTTATCCGACCCTGTACTTCAGGTCATCAAGTGGAAATCTATTACAATACGACGGTGGCAGGACCAAGAAAGACATCATAGAATTCATTGAAAAGAACCGGGACAAACCTGCCCAGCAAGAACAAGGAACAGATAAACCTGCTCATGCTGAACAAGTAAAAGATGAGCAAGAAACAGGAAAAGATGAGCTTTGA 1680 0.4292 MSKISEKHSARVMRCSYGVSNSYKNPSRDLLLHLNCFHSFPFKGTMARRVSICSFFFVFALSLIASQISAEESSETKEFVLTLDHSNFHDTISKHDFIVVEFYAPWCGHCKNLAPEYEKAASILSSHDPPIVLAKVDANEEKNKALASEYDVKGYPTLKIVRNGGKNVQEYKGPREADGIVDYLKRQSGPASTEIKSADEATAFIGENKVVIIGIFPKFSGEEFDNFTALAEKLRADYDFGHTLNAKHLPRGESSVAGPVIRLFKPFDELFVDSKDFHVDTLEKFVEESSTPVVTVFNNDPSNHPFVVKFFNSPNAKAMLFINFTAESAESFKSKYREAAEQFKQQGVSFLVGDVESSQGAFQYFGLKEEQVPLIIIQHNDGKKYFKPNLEAEHIPTWLKAYKEGNIAPYVKSEPVPETNNEPVKVVVGESLQDIVFKSGKNVLLEFYAPWCGHCKQLAPILDEVAISYQNDANVIIAKLDATANDIPGDTFDVQGYPTLYFRSSSGNLLQYDGGRTKKDIIEFIEKNRDKPAQQEQGTDKPAHAEQVKDEQETGKDEL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02276 559 Pfam Thioredoxin-like domain 216 400 - -
Vimu10g02276 559 NCBIfam protein disulfide-isomerase 80 559 IPR005792 GO:0003756
Vimu10g02276 559 PANTHER PROTEIN DISULFIDE ISOMERASE 56 556 - -
Vimu10g02276 559 MobiDBLite consensus disorder prediction 526 559 - -
Vimu10g02276 559 SUPERFAMILY Thioredoxin-like 289 421 IPR036249 -
Vimu10g02276 559 PRINTS Thioredoxin family signature 106 115 - -
Vimu10g02276 559 PRINTS Thioredoxin family signature 98 106 - -
Vimu10g02276 559 PRINTS Thioredoxin family signature 151 162 - -
Vimu10g02276 559 CDD PDI_a_family 81 184 - -
Vimu10g02276 559 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Vimu10g02276 559 ProSitePatterns Thioredoxin family active site. 444 462 IPR017937 -
Vimu10g02276 559 FunFam Protein disulfide-isomerase 289 418 - -
Vimu10g02276 559 FunFam Protein disulfide-isomerase 188 288 - -
Vimu10g02276 559 FunFam Protein disulfide-isomerase 68 187 - -
Vimu10g02276 559 ProSiteProfiles Thioredoxin domain profile. 59 189 IPR013766 -
Vimu10g02276 559 Gene3D Glutaredoxin 418 532 - -
Vimu10g02276 559 Pfam Thioredoxin 80 185 IPR013766 -
Vimu10g02276 559 Pfam Thioredoxin 424 527 IPR013766 -
Vimu10g02276 559 Gene3D Glutaredoxin 293 417 - -
Vimu10g02276 559 NCBIfam protein disulfide-isomerase domain 428 528 IPR005788 GO:0003756
Vimu10g02276 559 NCBIfam protein disulfide-isomerase domain 84 187 IPR005788 GO:0003756
Vimu10g02276 559 CDD PDI_b_family 192 288 - -
Vimu10g02276 559 SUPERFAMILY Thioredoxin-like 80 190 IPR036249 -
Vimu10g02276 559 ProSiteProfiles Thioredoxin domain profile. 402 530 IPR013766 -
Vimu10g02276 559 SUPERFAMILY Thioredoxin-like 193 292 IPR036249 -
Vimu10g02276 559 SUPERFAMILY Thioredoxin-like 391 529 IPR036249 -
Vimu10g02276 559 FunFam Protein disulfide-isomerase 419 532 - -
Vimu10g02276 559 CDD PDI_a_PDI_a'_C 423 525 - -
Vimu10g02276 559 CDD PDI_b'_family 307 403 - -
Vimu10g02276 559 Gene3D Glutaredoxin 188 292 - -
Vimu10g02276 559 Gene3D Glutaredoxin 69 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02276 Vimu-Chr10 33250696 33254397 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02276 K09580 - gmx:100170705 936.406