Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02273 ATGGGCTGCGGCGCCTCCAAGGTCGAGGACTTCCCCGCGGTGGCTCTGTGCAGAGAGCGGAAGAGGTTTCTAAAAGCCGCATCGGAGCAACGCTACGCTCTGGCAGCGGCACACGTCGCGTATTTCCATTCGCTCAGGGAAATCGGCGACGCTCTTCGCAAATTCGCAGAACAAGACCTGACTACCACCACCGGTTCTTCCTCTCCGGTTCTCACATTACCTTCCGAAACCAAGAGCATCAACAATAACAAACTTTCATCCTCTTCTGCTTCAATCTCTCACGCAGATTCCCCCGAGGGTTCCCACTTGCCTCTCTCTTCTGGATCCGAATTGAGTTCTCCTTCTCCTACTCATTCTCATTCTCACTCGCATTCTCATTCTTCTTCGCCTCAAATTCACGGTTCCCCAGAACCCGACCCACCTCCATACGGGTACTATCAAAATTACCAATACGCCCATTACATGAAAAGGTCTGTCCCCAATGGAAAACCAATGGTATATGAAGAACCAGAGAAGCACGTCGCAACAATTGGACAATGGCCCGATCCTTCTTACGGTTACGGTTTCTACGGGTTTCCGGGTGGGGATTATCCTTACTACCCTCCCCCGGGACCGTCGTCATCTCCGCCGCGTCCCCCTCCCGCGCCGCCGTCTCCTCCTCGCGTCTCCACTTGGGATTTCCTCAACGTCTTTGATAGCTTCGAGAACGGGTATCCGATTTATCCCCCTCGGTTCGGGTCGAGAGCGAGCAGTCCGGATTCGAAGGAGGTGAGGGAGAGAGAGGGGATTCCCGAATTGGAAGACGAGATGGAGCAAGAAGTCCCGAGAGAGGCTCCTGCGAAGGATAAGGAAGGTAAAAAGGTGGCTGGGGAAAAGGGATCCGCTGGAGTGAGGGATTTCGGGGAAGGGCCTTCGAACACTAAAACGGTCCCGTTGCAGCAGGTGAGTAGCAGCGAGGGGAGTTCCAAGACGGTGAGGTTCCATGACGGCAGCGATAACGGTTCCGTTGAAAAAGAGATTAGGAGCAGTCCCGACACTGTTGTTTCCGAAGAGCATGGTGCGAAGAAAGGGGTGAGCTTCGAGATTGATGAAGCGACGGTCACGACGGTGGAAGGTGACTCTTCCGTTCTGAGTAGTGTAACCACTTTGTCGGCGCACGGAACCAGGGATCTGCGTGAGGTTGTGGTGGAGATTCAGGATGAGTTTGTGACGGCATCGAATTTTGGGAAAGAGGTTGCATTGTTGCTTGAGGTTTGCAAACCGCCTTATCGGTCTAGGGTTGCTGCACTTAGAGAAAATAGCTGGGATGAATCCGACACCGAGGAGTGCCCCACACTCCTCAGGAACACTGTTGATGTGGGGAACGAGTACGCAACTCCTCGGCCTGTTTCCCTGTTCGGATCATGTTTAGATTTCATTATCTTGTCCAGAATCTTGCAGATGGTAGCACCTTTGAGATTACCCTCAGATCCTCCCTCTATACAATTTTCTTCTAGGAAAATAAAGTTGGCACGAGCATATTGTGGGGAACCTGGGAAAGACTTCAAGACAAATCCAGAAAATCTTTCATCCACATTGGAGAAACTTTATGCGTGGGAGAAGAAATTGTATAAGGAAGTTAAGGATGAAGAGAGGTTACGGGCCATTTATGAGAAAAAGTTCAAGAGACTGAAAACATTGGATAATCTAGGAGCTGAATCTAGTAAAATTGATGCTACTAGAGCATCAATTAGGAAGTTGCAAACAAAAATCAATATTTGCATCAGAACCGCTGAAACTATAATGGGAAGAATACATAAATTGAGGGATAATGAATTGCAGCCTCAACTTGCGGCATTGATTAATGGAAGTTATGGAGCTATTGATTTGATGAATGGCCTATTTGTCAGCAGATTCACGAAAATGTGGAAATTCATGCTCAAATGCCACCAGAAACAGTTCCAAGCTATCATGGAGAGTAAAAGTCAGTCTATTAAGATTAACCTTGGTGTGTCAGGAGACGAAGTTCTGAAGGCCATTGTAGAACTTGAAAAAGAGCTTTTGAATTGGTGCAGTCAGTTCAACATTTGGGTTAAGACTCAAAAAACTTATGTCAAGAATTTGAATGAGTGGCTCTTGAGATGCCTTCCTAATGAACCTGAAGAAACAGCCGACGGTATTGCCCCTTTCTCTCCAAGTCGGCTTGATGCTCCACCAGTTTTTATTATTTGTAATGATTGGTATCAAGCAATGACTAGAATTTCAGAAACGGAGGTGGCAGAGGCCATGCATGAATTTGCTCAAAAACTACATGAGTTATGGGAAAGGCAAGATGAGGTGCAACGACAGAGAATCAAAGCCGAGTATCTCAGAAAGGACTTTGAGAAACAACTTAGAACATTGCGCACAGAAATGGGAGGCTTAGAACATGATAAAGTTTCAGGAAAGACTGCATTGTCGAAGTTCACTTCTGATAGCGGTGTTTCACCACTAGATGATCTAAGGGTGGATTTAGATTCTATGAAGAAGAAATTACATGAAGAGAGGGTCAAGCATAAAGAAGCCGTCAAACTTGTTCATGATGCAGCTAATAATAGTTTACAGGCTGGTTTGATTCCCATTTTTAAGACATTAGAGAGTTTCACTTCAGAGGTGGTGAAAGCTCATGAACAAGTTAGGCTTAAAAATTCTTCTGGGGATTCGAGTAGGATCTTTATGAGGAGGAAGCAGGGAAATTTTGTAGTTGTTTCAAGAATGATTGATCTGGCCCCTTCTCTGCTGAAGCAACCATTTCACAATCCGAGGAAGCTTAAGGACTCTAGACGTTGTAAACTCCAATTTCAACCGATTGATTTTCTCGTTTTCAACTGTACTAGAGCTCGCAGGAAAGTAGAAATTGAAGATATAAATGTTAATGTCTGTGTATTTGCTTTTGATTTGTTGCATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTTAGAGTCCGCAGAGAGGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGA 3027 0.4602 MGCGASKVEDFPAVALCRERKRFLKAASEQRYALAAAHVAYFHSLREIGDALRKFAEQDLTTTTGSSSPVLTLPSETKSINNNKLSSSSASISHADSPEGSHLPLSSGSELSSPSPTHSHSHSHSHSSSPQIHGSPEPDPPPYGYYQNYQYAHYMKRSVPNGKPMVYEEPEKHVATIGQWPDPSYGYGFYGFPGGDYPYYPPPGPSSSPPRPPPAPPSPPRVSTWDFLNVFDSFENGYPIYPPRFGSRASSPDSKEVREREGIPELEDEMEQEVPREAPAKDKEGKKVAGEKGSAGVRDFGEGPSNTKTVPLQQVSSSEGSSKTVRFHDGSDNGSVEKEIRSSPDTVVSEEHGAKKGVSFEIDEATVTTVEGDSSVLSSVTTLSAHGTRDLREVVVEIQDEFVTASNFGKEVALLLEVCKPPYRSRVAALRENSWDESDTEECPTLLRNTVDVGNEYATPRPVSLFGSCLDFIILSRILQMVAPLRLPSDPPSIQFSSRKIKLARAYCGEPGKDFKTNPENLSSTLEKLYAWEKKLYKEVKDEERLRAIYEKKFKRLKTLDNLGAESSKIDATRASIRKLQTKINICIRTAETIMGRIHKLRDNELQPQLAALINGSYGAIDLMNGLFVSRFTKMWKFMLKCHQKQFQAIMESKSQSIKINLGVSGDEVLKAIVELEKELLNWCSQFNIWVKTQKTYVKNLNEWLLRCLPNEPEETADGIAPFSPSRLDAPPVFIICNDWYQAMTRISETEVAEAMHEFAQKLHELWERQDEVQRQRIKAEYLRKDFEKQLRTLRTEMGGLEHDKVSGKTALSKFTSDSGVSPLDDLRVDLDSMKKKLHEERVKHKEAVKLVHDAANNSLQAGLIPIFKTLESFTSEVVKAHEQVRLKNSSGDSSRIFMRRKQGNFVVVSRMIDLAPSLLKQPFHNPRKLKDSRRCKLQFQPIDFLVFNCTRARRKVEIEDINVNVCVFAFDLLHLNGQELLQENLRVRREVLEKMVPLYGWREMLKA 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 306 329 - -
Vimu10g02273 1008 Coils Coil 824 844 - -
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 61 133 - -
Vimu10g02273 1008 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Vimu10g02273 1008 Gene3D DNA ligase/mRNA capping enzyme 897 1001 - -
Vimu10g02273 1008 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 963 997 - -
Vimu10g02273 1008 Coils Coil 784 804 - -
Vimu10g02273 1008 Pfam Protein of unknown function (DUF632) 391 764 IPR006867 -
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 330 352 - -
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 198 223 - -
Vimu10g02273 1008 Pfam ATP dependent DNA ligase domain 951 997 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 61 145 - -
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 241 352 - -
Vimu10g02273 1008 PANTHER UNCHARACTERIZED 1 887 - -
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 273 293 - -
Vimu10g02273 1008 ProSiteProfiles ATP-dependent DNA ligase family profile. 959 997 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 251 265 - -
Vimu10g02273 1008 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02273 Vimu-Chr10 33197346 33205029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02273 1 791 Acyl Lipid Metabolism Gene Families AT2G27090 25.834 4.74e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02273 - - gmx:100782069 1252.27