Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02261 ATGGCAATCTGGGAGGGGTCTGTCTCTGCTGCACATGCGCCACCTCTGCCACTCACGCATTCACTTTGCCACAGCCTCCATCCAACTGGACCAGCCATCGGCGTCCAGCTCCTCCCCTGCTCACCTCTGCATAGGCAAGAGGGAAACGCTCTCGCTGTGTACTTGCGACCAAAATTTCCCCCAATTTCCCTCTGCATCTTCTTCTTCTTCTTCTGGCTTTGTACTTCTCCGTTCCGAGTGGTGCTTCCAGGTCTTTGTAACCAACGCACCCACACTCACCACTCCCAATCTCTCTCTCGTCTTCTCAAAAGAAACCACGCTCACTTCCGGCCAGGAGATACCAAAACGATGCCGTCGCGGTCTCTACCGCGGTCGAAACTATCAACCAAGCTCCTCAACATAAGCATATCCTCGCTGTGCAAAGCGAAGCAAATATCCAAAGCCGAATCCGTAATAACCGACGGCATAAGAATCGGCGTGCTCCCTGACGCGGTCACATACAACACCCTAATTGATGCCTACTGTCGTTTCGCCTCAATCGATGTCGCTTACTCCGTCCTTGGGCGAATGCGCGAAGCAGGGATTCCCCCCGACGTCGTTTCGTACAATTCGTTAATGTCCGGCGCCGTCAGGAAGTGTATGCTCTTCGAGTCCCTCGACCTGTTCGAAGAAATGCAGGCGCGTGGCGTAACCCCCGACGCGTGGAGCCACAACATCCAAATGCACTGTCTGTTCAAGCTCGGAAAGCCCTACGAGGCCAATGGCGTTTTCAAAAAAGCCGTTCTCTGCGGCGAGGTTCACGCCACCACTTACAACATCATGATTAACGGTCTCTGCAAGAACGGTTACGTCTCCCACGCATTGAGCCTATTCAGGAACTTACAGAGGCACGGTTTCGTGCCTCAGGTTTTGACCTACAACGCGCTTATCAACGGGCTCTACAAGGCCAAGCGGTGGAAGGACGCGCAGATGGTGCTCAAGGAGTTTGGGGAGTCCGATTACGAACCGAACGCGATTACCTACACCACCGTCATGAAGTGGAGCTTCCGGCGCGGTTTTTTCGAGCAAGGGTTAGAGATTTTGTCGGAGATGAGGAATTTAGGGTTCACGTTTGACGGATTCGCATACTGCACGGTGATTGCGGCGATGATCAAGACTGGCCGGATGCGCGAGGCGGAGGAGATAATTGATATCATGGTGAGTACCGGCATCCGGCCAGATCTCGTGTCATATAACACTTTGATTAACCTTTATTGCAGGCAGGGGAGGGTGGATGATGCATTGAAGTTGTTGGATGAGATTGGGGAGGAGGGGTTGGAGTGTGATCAATACACGCATACTATTATTGTTGATGGATTGTGTAAAGCTGGTAATTTTGATGGTGCTCAGAGGCATTTGTATTATATGAATACATTAGGGTTTGGATATAATTTGGTTGCGTATAATTGTATGATTGATGGCTTGGGGAAGGCTGGGCATATCGATCATGCTGTGAAGTTGTTTGAGGAGATGGAGGGCGAGGAGGTTCCTTTGTGCCTCGAAGGTGGATACCAGGTGTTGAGGGCCACTCAGCGGGCGGTTCTTGATGGCCTCCTCGATATTGGGTTTACTAATGAAGCGAGGAAGCTTCGGTCGAGGATCAGATTGGCACGGCTTATGGACCTATGTTGGAGTGAAGTCAGGCAACAAAAGAACGGTACTTTGACATGTGGTGAAAGTAGAGATAGTGAGATATCAGAACCATTATCGAGGCCTCAGTTCCTGTGTTTGATTGAAGGTTCTGCATGCCACCAAGGATCCATACTCGGATACGTAACAATTGGTCCGACCGACCGGATAGTCAGAGAAGAGAAAAGGGGTGAGGAAGGAAACTGCCAGATTGATAAAGAGGAGCAAAAAAAAGAGATCATGGAGGAAAGAATGAACCCAGTCGAAGGGAAACTGGAAAGCATGGGACTGAAACTGGAGCACATGGAGCGGTCCATGCAGGCGGAGACGGCGGCAATCCGAAAAGAATTACAGAAACTGATGAGGATAATGGGAGGACATCTAGATGGAAATTCAGATGGAAGCTAG 2076 0.5063 MAIWEGSVSAAHAPPLPLTHSLCHSLHPTGPAIGVQLLPCSPLHRQEGNALAVYLRPKFPPISLCIFFFFFWLCTSPFRVVLPGLCNQRTHTHHSQSLSRLLKRNHAHFRPGDTKTMPSRSLPRSKLSTKLLNISISSLCKAKQISKAESVITDGIRIGVLPDAVTYNTLIDAYCRFASIDVAYSVLGRMREAGIPPDVVSYNSLMSGAVRKCMLFESLDLFEEMQARGVTPDAWSHNIQMHCLFKLGKPYEANGVFKKAVLCGEVHATTYNIMINGLCKNGYVSHALSLFRNLQRHGFVPQVLTYNALINGLYKAKRWKDAQMVLKEFGESDYEPNAITYTTVMKWSFRRGFFEQGLEILSEMRNLGFTFDGFAYCTVIAAMIKTGRMREAEEIIDIMVSTGIRPDLVSYNTLINLYCRQGRVDDALKLLDEIGEEGLECDQYTHTIIVDGLCKAGNFDGAQRHLYYMNTLGFGYNLVAYNCMIDGLGKAGHIDHAVKLFEEMEGEEVPLCLEGGYQVLRATQRAVLDGLLDIGFTNEARKLRSRIRLARLMDLCWSEVRQQKNGTLTCGESRDSEISEPLSRPQFLCLIEGSACHQGSILGYVTIGPTDRIVREEKRGEEGNCQIDKEEQKKEIMEERMNPVEGKLESMGLKLEHMERSMQAETAAIRKELQKLMRIMGGHLDGNSDGS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vimu10g02261 691 Pfam PPR repeat 476 505 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vimu10g02261 691 Pfam PPR repeat 339 369 IPR002885 -
Vimu10g02261 691 Pfam PPR repeat 375 404 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vimu10g02261 691 Gene3D Tetratricopeptide repeat domain 88 265 IPR011990 GO:0005515
Vimu10g02261 691 Pfam PPR repeat family 162 208 IPR002885 -
Vimu10g02261 691 Pfam PPR repeat family 406 455 IPR002885 -
Vimu10g02261 691 Pfam PPR repeat family 269 315 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Vimu10g02261 691 SUPERFAMILY TPR-like 241 433 IPR011990 GO:0005515
Vimu10g02261 691 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 117 346 - -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 339 370 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 165 199 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 305 338 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 479 507 IPR002885 -
Vimu10g02261 691 NCBIfam pentatricopeptide repeat 270 302 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Vimu10g02261 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vimu10g02261 691 Gene3D Tetratricopeptide repeat domain 331 399 IPR011990 GO:0005515
Vimu10g02261 691 Gene3D Tetratricopeptide repeat domain 266 330 IPR011990 GO:0005515
Vimu10g02261 691 Gene3D Tetratricopeptide repeat domain 468 549 IPR011990 GO:0005515
Vimu10g02261 691 Gene3D Tetratricopeptide repeat domain 400 467 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02261 Vimu-Chr10 33075773 33080351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02261 136 548 Glycosyltransferase AT1G05670 28.087 4.96e-49 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02261 - - gmx:100808229 660.218