Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02260 ATGGAAATCGACAGCGAAAGCGATGACCAGACAAACTCCGCCGGGGAAAATGATACACTTGCCGCAGACCTTACTGCCCTCGGCAAGGCCATTCCGTGGGTTGAAAAATACCGCCCCCAGTCTCTCGACGACGTCGCCGCTCACCGTGACATTGTTGATACCATTGATAGGCTAACTACAGAGAACAGATTGCCGCATCTTTTATTGTATGGCCCTCCTGGAACGGGCAAAACATCAACCATTCTCGCTGTGGCACGCAAACTATATGGTCCACGCTTCCAAAATATGATTTTGGAGCTCAATGCATCAGATGACAGAGGAATTGAGGTCGGTTCTGCATTGCGGACTTCTACTTCCTATACTAGTCTATTGGTCAATTCAGAGGTTTTGGTGTTCTCCTTTGTTTTAGTTGGTTGTCCGGTCATATATCTCCTGCAGATTTATTTCTCTAAAAGTCGTAGTTTAGGTGCTAAAATTGCTCCCATTCTTCTCATTATTATTTTCTATTCTGCAAGTGTTAAGTCCTCTGTAAAGCTCGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATCGAGAAATATACAAAAAGCACCAGGTTTGCTCTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGGTTTCGATTTGCCCCTCTTGACGCCGTCCATGTCACTGAAAGACTGAAACACGTTATTAAGGCTGAAGGGTATGCTTCCTGTTCTATATTATCTAGTCTGCCTGCAGTAGCTGGATTGGATGATGTATTCTGGACACTTGTGCATGTGAGTGCCAACGTAATGATCATCAATGAAGCAGATGATGCTTTCATTGCTTATCTTGGGAACTTGGACGATGGCTTAGCAGCCCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTAAATATTCTTCAGTCGTCTCCGGTACTCATCACTGACGCAACCGCCGCCGTAGCCGCCGTCTCCGCCGTCGCCGTCGCCGCCACCGTCGCCGGAGTTTCAGAATCGACCGGCGACCACTCCACGTGGATCGTCTCGGCCGAGCGACCACCGTGGTCCAAAGATCGCGGTGATCGGAGCTCTCACGCGCCGCCGCAAGGTTCGCAGATCCGTCACTTCCCATCGCGCGTGCCGGCGCGTCGCCGGAGGGTTTCGCCGCCGACCAACACCGCCGGTTTCTCCCTCTCCATGGCGTCTTCTTCGTCAACAACCACCTCCTCTGCTGGTGCCTCCTCGTCTGATTCCCCAATATATACTAATTTTGTGAATGTACACTTGTCCATTGACAAGTTAGATGGAACCAATTATGCAACATGGGCATCCGACATCAAACTTTGGTTGAAGAGTCAGGGGTGTGTAGATCACTTCACTAATAATGTGACTAGTGTTCCCACAGATGACGCTTCCCCAAAGTTATTATATACAAATGACACCCAACGTCTTTATGGTGTCTGTCAGGACCTATTCACTGTTATTGGTCCGCGTAGTCCTGGTCCCATGGCAGAGTATTTGGGTAAATTCTTCATGTTGTTGGCTTTATACGGACTCTCTGATGATTCCTCTCATGTCCGTGATCAGATTTTGGGTTCTCCTGTCATACCCAACTTTACTTCTACTTGTTCTGCTCTTTTGCGTATTCCGAGCAAACCAGTCGTTGAGACACTTCATATTGATGATTCCTCGGCTATGGCTGCCCAACGGGATGATCGAAGTCGGACTCGCAAGCCAGGTAGAGGACGACCAAAATGTGACCACTGTGGCAAACTAGGCCACAGAATTGATAGATGTTATGCACTTCATGGACGTCCTCCTCGATCTGCAGCAATGGTGAATTCTGGTCCACCCCCTCAACCCCCGTCTGCAGACCATCCTACTTCATCAAATTCTGTAGACAACCCTGCAGTCTTCAACGAATTTCTCAAATGGTATGAGGATCGTCAGCAATCTAGTTCCACTACATCTGCCTCTGTTTTCTTCGGATCTTGGGTCCTTGACTCAGGCGCCACCGATCATATAACTGGTAACAAGTCCTTGTTTTCTTCCTTGTCATGTCCGAATAATTTACCCTCGGTAACAATGGCTGATGGGTCTATAGTCTCATCTCATGATATTGGTACTGTTCATATTTTTCCGTCCATATCCATTGATCATGTACTCTATGTCCCTGGATCTCCTTTCAATTTATTGTCCATAAGTCGTCTAACTCATTTCCTTAATTGTGTTATTTCATTTACCAAAGATTCTGTTTATTTGCAGGACCGGAGTTCGAAACACATGATTGGCACAAGATGTGAGTTTCATGGCCTCTATCTTCTACGCCCTTCTCCACATGCTGGCATAATCATGGAGTCACCATCCCTTCTTCATGCTCAGTTAGGTCATCCCAGCCTTGCCAAACTACAACAACTTGTTCCGAGTTTGTCGAAGTTATCAAGTTTGTCGTGTGAGTCTTGTCAGTTAGGAAAGCATACTCGAAGTTCCTTTCCTCGTAGTGTGTCACAAAGAGCATCGTCTCCTTTTTCATTAGTCCATTCTGATATTTGGGGTCCTAGTCGTGTTAAGTCCACTTTAGGCTTTCAGTATTTTGTTACTTTTATTGATGACTATTCAAGATGTACTTGGTTTTTTTTAATGAAGAATCGTTCTGAGTTGTTTTCTATTTTCCAATCAGTTTTCAATGAAATAAAAACACAGTTTGGGGTTTCTATTCGAACTTTACGCAGTGATAATGACCGTGAATACCTTTCTTCACCATTTAAACATTTTATGGCTTCTCATGGCATTCTTCACCAGACCTCATGTGCTTATACTCCTCAACAAAATGGGGTGGCTGAGCGCAAGAAAAGACACCTTATTGAAACAACTCGTACACTTCTAATCCATGGCCAAGTACCCTCGCATTTTTGGGGTGATGCAGTTCTCACTGCATGTTATCTCATAAACCGCATGCCGTCTTCTGTCCTAGATAACAAAATCCCTTATTCCGTCTTATTCCCTCAAGACCCTTTACATCCATTACCTCTTAGAGTTTTTGGGTCTACATGTTTTGTTCATGATTTTAGTCCTGGTCTTGATAAGTTATCTCCTAGATCTCACAAATGTGTCTTCTTAGGATTTCCACGGTCACAAAAGGGTTATAAGTGTTTTTCCCCTTCCCTCAATCGTCATTTCATCTCCGCTAATGTCACCTTTGATGAATCTTCGTTTTATTTTTCTCATATATCTCCTAGTTCTGTACCTCCACCTCCTACTGTTGATATTCCTATTGTCTGTGATCCTTTAGACTCTCATTCCCCACAGGATCGTCCTTCAACTCCACCCCTTCAAGTTTATAGTCGCCGCAATCGTCTCCCTCATGACTCCCCTCCTGTGCCGCCTCCTGTGTCTCCTCCGGCTCCAGCAAATGAGTCTGACCTGCCTATTGCCCTCCGTAAAGGTATACGCTCTACTCGTAACCCTTCTCCCCATTATATTTCTGTGGGTGATGCCTTAACTCATCCTGGTTGGCGTCAAGCCATGCTGGATGAATTAAGTGCTTTACAGAAAAGTGGAACTTGGGAGCTTGTCCAATTACCATCTGGAAAGTCTGTTGTTGGTTGCAGGTGGGTGTATGCTATCAAGGTTGGCCCTGATGGTACAATTGATCGTTTGAAGGCTCGACTGGTTGCCAAAGGATACACACAAATTTTTGGTTTGGATTATGGTGATACTTTTTCTCCAGTGGCGAAAATGACCTCTGTTCGCCTTTTCATTGCCATGGCCGCTCTTCGCCAATGGCCTCTTTACCAACTTGATGTCAAAAATGCTTTTCTTAATGGTGATTTGCAGGAAGAAATTTACATGGAGCAACCGCCTGCCTTTGTTGCTCAGGGGGAGTCATCTGGATTGGTATGTTGTCTTCGCAAATCCCTATATGGCCTAAAACAGTCTCCTCGGGCCTGGTTTGGTAAATTCAGCAGTGTTGTTCAACAATTTGGTATGTCTCGCAGTGAAGCAGATCATTCAGTGTTCTATCGCCACTCAAGTGCTGGATGTATCTACTTAATAGTGTATGTCGATGACATTATTCTCACAGGAAGCGACTACCTTGGCATCTCTCAGATGAAACAACACCTTTGTCACCATTTTCAAACCAAAGATCTTGGCAAACTACGGTATTTTTTGGGTATTGAAGTAGCACAATCCAATGATGGTATTGTCATATCTCAGAGGAAGTATGCGTTAGACATCTTGGAGGAAACAGGGTTAATGAACTGTAAGTCTGTTGAGACACCTATGGATCCTAACATCAAGCTCCTACCAAATCAGGGGGAGCCTTTCTCAGATCCTGAACGTTACAGAAGATTAGTTGGTAAATTAAACTATCTTACTGTTACGCGTCCTAACATTTCCTTCGCAGTTAGTGTGGTGAGCCAATTCCTTAACTCCCCATGTGAAGACCATTGGGATGCAGTGGTTCGCATACTGAAGTATATTAAAGGATCACCTGGAAAAGGTTTGCTATATGGTCCTAACAACGATACAAAAATCGTGAGGTCTACTTCTGGATATTGTGTCTCTATTGGTGGCAACCTGATATCTTGGAAAAGTAAGAAGCAAAGTGTTGTGGCTAGGTCCAGTGCAGAAGCAGAATATAGAGTTATGGCATCAGCTACTTGTGAGCTTGTGTGGCTTAAACAATTACTTAGTGAATTGAAATTTGGAGATATCACTCACATGACACTTATATGTGATAATCAAGCTGCTCTTCATATTAGCTCTAATCCTGTCTTCCATGAGAGAACCAAGCACATTGAAGTTGATTGCCATTTTATTAGAGAAAAAATCATATCTGGATATATCAAGACTGAGTTTGTTAACTCAAGCAACCAGTTGGCGGACATATTCACTAAGTCCTTGCGAGGACCTAGAATTGACTATCTTTGTAACAAGCTTGGAACATATGATTTATGTGGAAAATAA 5013 0.4407 MEIDSESDDQTNSAGENDTLAADLTALGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGPRFQNMILELNASDDRGIEVGSALRTSTSYTSLLVNSEVLVFSFVLVGCPVIYLLQIYFSKSRSLGAKIAPILLIIIFYSASVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGYASCSILSSLPAVAGLDDVFWTLVHVSANVMIINEADDAFIAYLGNLDDGLAALVRLSNGDMRKALNILQSSPVLITDATAAVAAVSAVAVAATVAGVSESTGDHSTWIVSAERPPWSKDRGDRSSHAPPQGSQIRHFPSRVPARRRRVSPPTNTAGFSLSMASSSSTTTSSAGASSSDSPIYTNFVNVHLSIDKLDGTNYATWASDIKLWLKSQGCVDHFTNNVTSVPTDDASPKLLYTNDTQRLYGVCQDLFTVIGPRSPGPMAEYLGKFFMLLALYGLSDDSSHVRDQILGSPVIPNFTSTCSALLRIPSKPVVETLHIDDSSAMAAQRDDRSRTRKPGRGRPKCDHCGKLGHRIDRCYALHGRPPRSAAMVNSGPPPQPPSADHPTSSNSVDNPAVFNEFLKWYEDRQQSSSTTSASVFFGSWVLDSGATDHITGNKSLFSSLSCPNNLPSVTMADGSIVSSHDIGTVHIFPSISIDHVLYVPGSPFNLLSISRLTHFLNCVISFTKDSVYLQDRSSKHMIGTRCEFHGLYLLRPSPHAGIIMESPSLLHAQLGHPSLAKLQQLVPSLSKLSSLSCESCQLGKHTRSSFPRSVSQRASSPFSLVHSDIWGPSRVKSTLGFQYFVTFIDDYSRCTWFFLMKNRSELFSIFQSVFNEIKTQFGVSIRTLRSDNDREYLSSPFKHFMASHGILHQTSCAYTPQQNGVAERKKRHLIETTRTLLIHGQVPSHFWGDAVLTACYLINRMPSSVLDNKIPYSVLFPQDPLHPLPLRVFGSTCFVHDFSPGLDKLSPRSHKCVFLGFPRSQKGYKCFSPSLNRHFISANVTFDESSFYFSHISPSSVPPPPTVDIPIVCDPLDSHSPQDRPSTPPLQVYSRRNRLPHDSPPVPPPVSPPAPANESDLPIALRKGIRSTRNPSPHYISVGDALTHPGWRQAMLDELSALQKSGTWELVQLPSGKSVVGCRWVYAIKVGPDGTIDRLKARLVAKGYTQIFGLDYGDTFSPVAKMTSVRLFIAMAALRQWPLYQLDVKNAFLNGDLQEEIYMEQPPAFVAQGESSGLVCCLRKSLYGLKQSPRAWFGKFSSVVQQFGMSRSEADHSVFYRHSSAGCIYLIVYVDDIILTGSDYLGISQMKQHLCHHFQTKDLGKLRYFLGIEVAQSNDGIVISQRKYALDILEETGLMNCKSVETPMDPNIKLLPNQGEPFSDPERYRRLVGKLNYLTVTRPNISFAVSVVSQFLNSPCEDHWDAVVRILKYIKGSPGKGLLYGPNNDTKIVRSTSGYCVSIGGNLISWKSKKQSVVARSSAEAEYRVMASATCELVWLKQLLSELKFGDITHMTLICDNQAALHISSNPVFHERTKHIEVDCHFIREKIISGYIKTEFVNSSNQLADIFTKSLRGPRIDYLCNKLGTYDLCGK 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02260 1670 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1202 1443 IPR013103 -
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 361 430 - -
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 575 603 - -
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 404 430 - -
Vimu10g02260 1670 SUPERFAMILY Ribonuclease H-like 852 1012 IPR012337 -
Vimu10g02260 1670 CDD RNase_HI_RT_Ty1 1529 1650 - -
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 621 646 - -
Vimu10g02260 1670 ProSiteProfiles Integrase catalytic domain profile. 852 1018 IPR001584 GO:0015074
Vimu10g02260 1670 Pfam ATPase family associated with various cellular activities (AAA) 67 232 IPR003959 GO:0005524|GO:0016887
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 579 603 - -
Vimu10g02260 1670 Pfam Integrase core domain 855 955 IPR001584 GO:0015074
Vimu10g02260 1670 Gene3D - 848 1028 IPR036397 GO:0003676
Vimu10g02260 1670 PANTHER GAG-POL-RELATED RETROTRANSPOSON 845 1665 - -
Vimu10g02260 1670 SUPERFAMILY DNA/RNA polymerases 1200 1620 IPR043502 -
Vimu10g02260 1670 CDD AAA 51 234 - -
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 1136 1151 - -
Vimu10g02260 1670 Gene3D - 25 235 IPR027417 -
Vimu10g02260 1670 Gene3D - 298 348 - -
Vimu10g02260 1670 SMART AAA_5 63 238 IPR003593 GO:0016887
Vimu10g02260 1670 MobiDBLite consensus disorder prediction 1102 1155 - -
Vimu10g02260 1670 Pfam GAG-pre-integrase domain 802 840 IPR025724 -
Vimu10g02260 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02260 Vimu-Chr10 33065493 33073282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02260 1186 1627 Receptor kinase-like Gene Family AT4G23160 49.891 1.01e-143 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02260 - - qsa:O6P43_030195 1120.92