Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02245 ATGGGAGTGCAAGGAACTTTGGAATACTTCTCCGACTTACTCAGCAGCACAAAGAAGAAGAAGAAGAAGAAGCAAATGCAAACTGTAGCTCTGAAAATCAGAATGGACTGTGAAGGATGTGCACGGAAGGTTAAGCATGTTCTTTCTGATGTTAAAGGAGCTAAATCGGTGGAAGTGGACTTGAAGCAGCAGAAAGCAACGGTGACAGGGTATGTTGAGGCGAAGAAAGTTCTTAAGGCTGCTCAATCTACTAAGAAGAAAGTTGAACTGTGGCCATACGTTCCCTACACTATGGTGGCTAACCCTTATGTTTCTCAGGCCTACGATAAGAAGGCACCTCCTAATATGGTGAGGAAGGTGGCTGACACTGCCAACTTGTCAGAAACCACCGTGGACGACCGCTACATACAAATCTTCAGTGATGAAAACCCAAATGCCTGCTCTATCATGTAA 453 0.4481 MGVQGTLEYFSDLLSSTKKKKKKKQMQTVALKIRMDCEGCARKVKHVLSDVKGAKSVEVDLKQQKATVTGYVEAKKVLKAAQSTKKKVELWPYVPYTMVANPYVSQAYDKKAPPNMVRKVADTANLSETTVDDRYIQIFSDENPNACSIM 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02245 150 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 28 148 IPR045181 GO:0046872
Vimu10g02245 150 SUPERFAMILY HMA, heavy metal-associated domain 25 92 IPR036163 GO:0046872
Vimu10g02245 150 Gene3D - 13 92 - -
Vimu10g02245 150 Pfam Heavy-metal-associated domain 33 86 IPR006121 GO:0046872
Vimu10g02245 150 CDD HMA 35 89 IPR006121 GO:0046872
Vimu10g02245 150 ProSiteProfiles Heavy-metal-associated domain profile. 26 89 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02245 Vimu-Chr10 32862497 32863079 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02245 - - gmx:100782955 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02245 10 32862497 32863079 Vimu10g02245 10 32862497 32863079 ECH