Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02233 ATGGCGGAAAGTTTGGAACGTATTGACGTGAAGCTGTCTCCTGCGCCGGACGCAAGGATGCCGTTGATGAAATCGAAAGGAGGACGACGGCGAGGGGACACGTGGGTGGTTTCAGTGTTCGTGATAATCCAAATCGGAGTTTTCATTGCAACCATGCTCGTCAACGATTGCTGGACCAATTCTCACGGCGATTGCCTTCTGCAAACCCTCGGAAGGTTCTCCTTCCAGCCTCTCCCCGAGAACCCACTCCTAGGTCCTTCTCAGTCCAAGTTAGATGAAATGGGAGCTCTTCGATGGATCCTTTTGACAGAGAAGCACCAAACTTGGCGTCTTTTCACGTTTCCATTTTTGCATGGTGGACTCTTTCACCTGCTTCTCAATCTCTCGAGTATCGTCTACGTGGGAGTTCGCCTAGAGCGCGAATTTGGACCCATAAGGATTGGTATAATCTATGCATTGTCAGCTTTCGTGGGAGGCTTGGTGGCTTCTCTTTTTCTCCGAAACACCCCCGCTGTTGGTGCTTCCGGTCCTTTATATGGATTACTGGGAACATTGCTTTCCGAACTTATTTCGGCAATAGCAACATTAGTGTTTGTCTTTGTGTGCAACTTCGTCCTTGGTTTTCTGCCTTATGTAGACAATTTTGCCAGCATTGGAGGTTTTATATCAGGATTCCTTCTTGGATCTGTTTTTCTACTCAGCCCTCAGCTCCAACCAGTAGCTCCAAATAAAGGTGGTCTTGTTGAGTATGGTGTCAAAAGTTACATCAACTTAAAGTTGAAGAAAAAGCTGGACAGACCGGTTCTCAGGATTGTTTCTCTTATCCTCTTCGGCCTATTATTGGCCGGTTGTCTTGTGGTAGTTCTTCATGGAATCAACATCAACAGTTATTGCACATGGTGTCCATATGTGGACTGTATCCCTTTTACAAGCTGGCACTGCAAAGACACAGAAGCCTCTTGTGAGACAATGGTGAGCAATGCTCAGCTGACAATGACCTGTATAGGGAATGGCAACTTCAGGGTCTATCCTTTTACCAACATTTCTCGGGCAAGGATGAATGATTTGTGCAATCTGATATGCTGA 1086 0.4641 MAESLERIDVKLSPAPDARMPLMKSKGGRRRGDTWVVSVFVIIQIGVFIATMLVNDCWTNSHGDCLLQTLGRFSFQPLPENPLLGPSQSKLDEMGALRWILLTEKHQTWRLFTFPFLHGGLFHLLLNLSSIVYVGVRLEREFGPIRIGIIYALSAFVGGLVASLFLRNTPAVGASGPLYGLLGTLLSELISAIATLVFVFVCNFVLGFLPYVDNFASIGGFISGFLLGSVFLLSPQLQPVAPNKGGLVEYGVKSYINLKLKKKLDRPVLRIVSLILFGLLLAGCLVVVLHGININSYCTWCPYVDCIPFTSWHCKDTEASCETMVSNAQLTMTCIGNGNFRVYPFTNISRARMNDLCNLIC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02233 361 SUPERFAMILY Rhomboid-like 32 236 IPR035952 -
Vimu10g02233 361 Gene3D - 30 234 IPR035952 -
Vimu10g02233 361 PANTHER RHOMBOID-RELATED 22 314 IPR002610 GO:0004252|GO:0006508|GO:0016020
Vimu10g02233 361 Pfam Rhomboid family 104 234 IPR022764 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02233 Vimu-Chr10 32704155 32706868 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02233 - - gmx:100793747 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02233 10 32704155 32706868 Vimu10g02233 10 32704155 32706868 ECH