Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02231 ATGGAACCGGGTCTCTCTCTTGGGTTGTGCGCGTCGTCAACCGCGGCTCCTCTCAGCGATACCTCTGTGCCGTGGCGGTTTCGACACCTCAAAGAAGAAGAAGAGGAAGAAAACAACGGTGAGACTATTAACTTCATGGACCAGCGCGTGAAGAGGAAGATAGAAGGACATCAACAACCCTGTTTCCCTTCGAAGCGTGTGGCAATGGATTCCTCGGTGGGATGGTGGAACAAGCCACTGGGAGTGGCGGACCCCGAGATTTTCGAAATCATGGAGAAAGAAAAGCGAAGACAGTTCAGGGGAATAGAGTTGATTGCTTCGGAGAACTTCGTTTGCAGGGCAGTGATGGAAGCTTTAGGAAGCCATTTAAGCAATAAATATTCTGAGGGAATGCCTGGGGCCAAGTACTACACAGGAAATCAGTACATTGATGAGATTGAGCTTCTCTGTTGCCAGCGTGCTTTGTTGGCCTTTGACCTTCACCCTAACAATTGGGGTGTTAATGTTCAACCTTATTCTTGTACTTCTGCTAACTTTGCTGTGTACACTGGGATTTTGCATCCCGGGGATAGGATTATGGGTATGGACTCAGCCTCTGGGGGGCATTTGAGTCATGGTTATTATACACAAGGTGGTAAGAAGGTTTCTGCTGCTTCTATTTTCTTCGAGACTTTGCCTTATAAGGTTAATCCTCAGAGTGGTTACATAGACTACGATAAGCTTGAGGAGAAAGCAATGGATTTTAGGCCTAAGATACTTATCTGCGGTGGGAGTTCGTACCCCAGGGAATGGGATTATGCGAGGTTCAGGCAGGTTGCTGACAAATGTGGGGCAGTGTTGATGTGTGACATGGCGCATATCAGTGGCCTTGTGGCAGCTAAGTTGGAATTTGATGAAATTACTTTTGCGAATGGAAGTTCTACTGGAAATTATATGATTGTTTTCATTGATCACACTGAACTTACCCCTAGCATGTTTGATGTGGAAGTGGTCAGTCCATTTGATTACTGTGATATTGTTACTTCGACTACTCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGGGGGCCAAAACCGAGGAGGCAAGGTTTTGTGCTTAATCATGGGGACGATAGTAATTATGATTTTGAGGAGAAAATAAACTTTGCTCTGTACCCATCATTACAAGGAGGCCCTCATAATAATCATATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGAGTACAAAGTGTACATGCAGCAGGTGAAGAGAAATGCGCAGGCATTAGCATCTGCCTTGTTGAGAAGAAATTTCAGATTGGTGACAGGTGGGACCGACAATCATCTTTTGCTGTGGGATCTAACAGCACTTGGTTTAATTGACAGAAACTATGAAAAGGTCTGCGAGGCATGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCCATTTCTACTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGTTGTTTGGAAGAAGATTTTGAAACCATAGCTGATTTTCTTCTTAGGGCGGCTCACATTACCAGCATGGTGCAAAGGGAACATGGGAAATCATGTAAAGATTTTCTCAAGGGTCTTGAGAATAATAAAGATATTTCTGAGCTGAGAAATCGGGTTGAGACATTTAGTTCCCAGTTTGCAATGCCAGGATTCGATTGA 1701 0.4433 MEPGLSLGLCASSTAAPLSDTSVPWRFRHLKEEEEEENNGETINFMDQRVKRKIEGHQQPCFPSKRVAMDSSVGWWNKPLGVADPEIFEIMEKEKRRQFRGIELIASENFVCRAVMEALGSHLSNKYSEGMPGAKYYTGNQYIDEIELLCCQRALLAFDLHPNNWGVNVQPYSCTSANFAVYTGILHPGDRIMGMDSASGGHLSHGYYTQGGKKVSAASIFFETLPYKVNPQSGYIDYDKLEEKAMDFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKLEFDEITFANGSSTGNYMIVFIDHTELTPSMFDVEVVSPFDYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRRQGFVLNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKVYMQQVKRNAQALASALLRRNFRLVTGGTDNHLLLWDLTALGLIDRNYEKVCEACHITLNKCAIYGSISTGGVRIGTPAMTSRGCLEEDFETIADFLLRAAHITSMVQREHGKSCKDFLKGLENNKDISELRNRVETFSSQFAMPGFD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02231 566 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 77 298 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu10g02231 566 CDD SHMT 84 556 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu10g02231 566 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 338 354 IPR019798 GO:0030170
Vimu10g02231 566 Gene3D - 330 422 IPR015421 GO:0003824
Vimu10g02231 566 Gene3D - 109 303 IPR015421 GO:0003824
Vimu10g02231 566 Gene3D Aspartate Aminotransferase, domain 1 84 108 IPR015422 GO:0003824
Vimu10g02231 566 Gene3D Aspartate Aminotransferase, domain 1 423 563 IPR015422 GO:0003824
Vimu10g02231 566 Pfam Serine hydroxymethyltransferase 322 514 IPR039429 -
Vimu10g02231 566 Pfam Serine hydroxymethyltransferase 82 304 IPR039429 -
Vimu10g02231 566 Hamap Serine hydroxymethyltransferase [glyA]. 79 564 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu10g02231 566 SUPERFAMILY PLP-dependent transferases 76 565 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02231 Vimu-Chr10 32680766 32688055 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02231 K00600 - gmx:100776419 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02231 10 32680766 32688055 Vimu10g02231 10 32680766 32688055 ECH