Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02229 ATGGCTACTTTCCTTTCCAATCAATCTCTGTTTGCTCCTTGTCCTTGTTCTACTCCCTTCTCTTCAAAGCCCTTTCAAACCCTAAAACCCAAAATCATATATTTTTCATCTCCTGGGTATCCACGTCCCCTAAATTCCTCTCCCAATCGAAGAATCCCATTAAAGTATTCTCAAGATCCCCCTCCAACTAGAAATGATGAGACAGGTGAGACCCGGAAAGATTTCAGAGGGATAGACGGTGATGAACATAAAAAGCCATTACCCAGTTTAGTGGTCCTCCTTGAAGCATACAAGGAAGCCTTTTTTAATGGTGATGAAAATGGTGTTGCTCTGATTGAAGAGGGAATATATTCCGCAGTAATTAGAAAAAATAAATTGATTCAGAAAGTATCAAGTTTATCAGCAGACAAAGCTACTTCCAAGGATAGATATGTTCGATTACAAGCTGATTTTGACAATTTAAGGAAAAGGTCCGACAAAGAAAGACTTAGCATCCAATCTGATGCCCAACAAGAACTCATTGAACAGCTTTTGTTGATGGTGGACAGTTTTGAGAAAACAAAACAGCAAACTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGATGTTAGCTATCAAGGCATTTACAAACAATTTGTAGAGATTCTGAGGAGTCATCATGTTTCAGTGATAGCAACAGTGGGCAAGCCTTTTAATCCCTTGCAACATGAAGCCATTGCACGTGAGGAGTCAGCAGAATTCAAGAAAGGGATTATAATTAAAGAATCACGACGTGGTTTCTTGCTCAGAGATCGAGTTCTAAGGCCAGCCCAGGTGAAGGTTTCATTAGGTCCTGGAACTAAGAAATCTCCTGTGTCTCCTGACAATTCCATGGAGCGACCTTCAACAGCTGCTGGAATAGATGAAAGATAG 912 0.4013 MATFLSNQSLFAPCPCSTPFSSKPFQTLKPKIIYFSSPGYPRPLNSSPNRRIPLKYSQDPPPTRNDETGETRKDFRGIDGDEHKKPLPSLVVLLEAYKEAFFNGDENGVALIEEGIYSAVIRKNKLIQKVSSLSADKATSKDRYVRLQADFDNLRKRSDKERLSIQSDAQQELIEQLLLMVDSFEKTKQQTKAATEKEKKIDVSYQGIYKQFVEILRSHHVSVIATVGKPFNPLQHEAIAREESAEFKKGIIIKESRRGFLLRDRVLRPAQVKVSLGPGTKKSPVSPDNSMERPSTAAGIDER 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02229 303 MobiDBLite consensus disorder prediction 39 81 - -
Vimu10g02229 303 CDD GrpE 141 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 MobiDBLite consensus disorder prediction 65 81 - -
Vimu10g02229 303 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 125 219 IPR013805 -
Vimu10g02229 303 Pfam GrpE 123 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 Gene3D Head domain of nucleotide exchange factor GrpE 221 275 IPR009012 GO:0006457
Vimu10g02229 303 Gene3D - 115 217 IPR013805 -
Vimu10g02229 303 PRINTS GrpE protein signature 173 188 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 PRINTS GrpE protein signature 145 161 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 PRINTS GrpE protein signature 228 243 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 PRINTS GrpE protein signature 255 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 222 276 IPR009012 GO:0006457
Vimu10g02229 303 ProSitePatterns grpE protein signature. 231 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 PANTHER GRPE PROTEIN 89 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 FunFam Protein GrpE 220 275 - -
Vimu10g02229 303 Hamap Protein GrpE [grpE]. 65 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g02229 303 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02229 Vimu-Chr10 32670427 32674350 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02229 K03687 - gmx:100809893 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02229 10 32670427 32674350 Vimu10g02229 10 32670427 32674350 ECH