Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02225 ATGGAAAACGCCGATGTATTCTTGGGCTTACAGGACTTCCTCGAACGCATGCGGCAGCCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATTGTTTCATTTTCGAACAATGCTCCTGATCCCGAGAGGGACAGTGCCTTGGTTCAAGCGTTTCTTGCGAAAATGGAAGCGGATTTCCGGGCTCATCCACTCTGGGCTGGTTGCTCTGAAGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTCATGACAAAGTTGTTTGCTCGTGTATTTGCTTCAGTTCCAGATGATGTAAAACTTGATGACCAACTTTCCGAGAAGATGGCTTTGATTCAACAATTTGTTCGACCTGAAAATCTGGATATCAAGCCACCATTTCAGAATGAATCATCGTGGTTGCTCGCACAGAAAGAATTACAGAAGATCAACATGTACAAAGCACCGAGGGACAAACTTGTGTGTATTTTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGCTTGCTTCCAAAGAGAATCCTCCGGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGGCATCAATCTCGATTGGTTGCTGAAGCAGCATATTATTTTACCAACATGCTCTCTGCTGAGTCCTTCATCTCAAACATTGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGTAACATGGAATTTGCTCGTGCTATGCTTTCAGGCATTTCAGTTGATACACAAGATCCTGGTTCACCTTATCAAAATAATGGACAGCATCCGGTAGCAGAACCCACTAGGCACAAAAATAAAGCTTTGAATGATAACAAGGACTCTGCACTACGAACTCCGTCATCTGTTGCAAGATCAGAAGGCAAGAAAGTTGCTTTTGCAGATGAATTACCGATGACAAAAGTTCCATCTCTCTCTGATTTGGAGAATAAAGGGGCAAATATGATCCTGAAGGAGGACAAGTTGAATGAAGTTTTCGGGGAGTTTCCATATTTGTTTGCTGGTGTAGGGGATCTAACAGTAAGTGATGTTGAAGACCTACTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCTAAAGGATTAGGTGTCTCTCCTACATCTCAGCCGCCAGCCGCCCAAAATAATTCTGAAGACCGTGCTGAAACAACAATAGACTCTTCAGACGGTGGACCTCTAGATGAGAATAATAAATCAGAAGAATCTATTGATAAAACAGAGGATAGTTTGGATAAAGTTTCACCTATCGAGGAGCAAAAAATTGAGCCTGGTTTGTCACAGGATGAGCCAGCTGCTCCTGAGGGTGATGCCCCGATAAAGTAA 1413 0.4246 MENADVFLGLQDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPERDSALVQAFLAKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMALIQQFVRPENLDIKPPFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLASKENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFESNMEFARAMLSGISVDTQDPGSPYQNNGQHPVAEPTRHKNKALNDNKDSALRTPSSVARSEGKKVAFADELPMTKVPSLSDLENKGANMILKEDKLNEVFGEFPYLFAGVGDLTVSDVEDLLNNYKQLVFKYVSLSKGLGVSPTSQPPAAQNNSEDRAETTIDSSDGGPLDENNKSEESIDKTEDSLDKVSPIEEQKIEPGLSQDEPAAPEGDAPIK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02225 470 Gene3D VPS9 domain 99 265 IPR037191 -
Vimu10g02225 470 PANTHER RAB GDP/GTP EXCHANGE FACTOR 7 387 IPR045046 GO:0005085|GO:0016192
Vimu10g02225 470 MobiDBLite consensus disorder prediction 423 454 - -
Vimu10g02225 470 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Vimu10g02225 470 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Vimu10g02225 470 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Vimu10g02225 470 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Vimu10g02225 470 SMART vps9_2 135 254 IPR003123 -
Vimu10g02225 470 MobiDBLite consensus disorder prediction 269 308 - -
Vimu10g02225 470 MobiDBLite consensus disorder prediction 269 286 - -
Vimu10g02225 470 Gene3D - 17 97 - -
Vimu10g02225 470 MobiDBLite consensus disorder prediction 393 411 - -
Vimu10g02225 470 MobiDBLite consensus disorder prediction 393 470 - -
Vimu10g02225 470 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02225 Vimu-Chr10 32616232 32622299 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02225 K20131 - gmx:100810958 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02225 10 32616232 32622299 Vimu10g02225 10 32616232 32622299 ECH