LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g02208	ATGGTTGACGGTGCAGTACTTCCTGAAGCTGAGCATGAACCTCCACCCAATCCGTACCGCTGTCGTCCACCGCCGCCGCCATCTAACAACGCTTTTGCCGCACTGATATCGATATTAATCTTCTACATGCATCCTTTCTGCTGCGTGTCCGCCATTTCCGACCAGGCATCGCCAGTGAAACCCTCTTTCGCCGACTTCCCTATGCCGCCTCTCCCCGCCGCCGCCGCCGCCGCCGCCGTGAGATCCGATTCGGCTCCGCGGCACAGCCACAAGCACAGCCACAGCGGCAGTCAGCGGGAGCAGCCGGTGGACGTGAAGATCAACGACCTCGTTGGCAACGGAATCTCCGGAATACTGTACAAATGGGTGAATTACGGCAAAGGATGGCGACCGCGATGGTTTGTACTCCAAGACGGTGTTCTCTCCTACTATAAGATTCACGGACCTGATAAGATCGTCGTGAATCCCGAAACCGAGAAAGGCTCCATGGTTATCGGCGAAGAATCCATGCGCAGGATCACTCGCAACCGCAATTCATATCCCTGCCAGCACGTTTCGACGATTCGCGAGAGCAAATCGGATGACAAGCGCTTCTCGGTCTTCACTGGAACGAAGAGGCTCCACCTGAGGGCGGATACGCATGAAGATCGCGTGTCGTGGACGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCGCGGATGTCGAACAGCGAGTTGATGGCTCCGTTGGACAATGTAACTGTTTCGACGGAGAAACTGAGACTTCGGCTAATGGAAGAGGGAGTGAGCGAGGGGACTATTCAGGACAGTGAGCAAATTATGAGGACTGAGTTTGCGGCGCTGCAAAGCCAGCTTGTGCTGCTTAAGCAGAAGCACTCAATTCTCATTGACACTCTGCGCCAATTGGAGACAGAAAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATGAAGAGGCTTCCTCAAGATTAGCGCAAGAAAAATTTAGTGGAACCGGAAGTGAATCTGAAGATGACAATGATCGAAATGATGCTGCTGAGGAAGAAACTGATGATGATGACAATGCCTTTTTTGATACTCGTGATATTCTGTCGTCCAGTTCTTTTAAAAGTAATGGGTCTGATTATAGAATGTCATCCTTCTCTTCAGATGATGAAGGGTTCTATGCATTTGAATCAGAGGACGACATAGATCCTTCGATTAGATATGTTGGAACCAATTACCCTCATGTTAAGCGGCGTAAGAAATTGCCAGACCCTGTAGAAAAAGAGAAAGGAGTCAGTCTGTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAACGAGCCTCTTTCCTCCCTACAAAAATGTTTTGAGGAAATGGAGTACTCGTATCTTTTGGACCAAGCATATGAATGGGGAAGAAGGGGTAATAGCCTCATGAGGATTCTCTATGTTGCGGCTTTTGCTGTATCTGGCTATGCTGCAACAGAAGGAAGAGTTTGCAAACCATTTAATCCATTACTTGGGGAAACGTACGAGGCTCACTATCCGGATAAAGGCCTTCGGTTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATTGTAGCATGTCACTGTGAGGGTACGGGTTGGAAATTTTGGGGAGATAGCAACCTAAAGAGCAAATTTTGGGGGCGATCTATTCAGCTTGACCCTGTTGGTATTTTGACTTTGGAATTTGATGATGGGGAAGTTTTCCAGTGGAGTAAGGTTACTACATCAATATACAATCTCATATTGGGAAAACTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATCATTCAAGATAGGAACGGAAAAACTGTATCAACTTTGTTTGGAAAATGGGATGAAAGCATGTATTACGTTAATGGAGACTACACCGGGAAAGGGAAAGGTCATGAATCTTTGTCAGATGCCCGTTTGCTCTGGAAGCGAAGCAAGGCTCCCAAGATTCCCACTAGATACAACTTCACTCGCTTTGCCATCACACTAAACGAACTGACCCCTGGTTTGAAGGAGAAGTTGCCACCTACAGATTCAAGGTTAAGGCCAGACCAAAGGTATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTACGGCTAGAGCAGCGGCAGCGCCAGGCTCGGAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGCGAAGGATAAGGCGAGCGGGACATACCGTTACGTAGGAGGATACTGGGAGGCCCGACAAAGAGGAAACTGGGACTCCTGCCCTGACATCTTTGGCCAAATTCCTTCTTCCGATCATATTTCTGACGAAGGTCAAATTACATTTTACCAGTTCGCTGTCATGTGCACCCATGAAATTCATGTAACCCAATCAGGTGAAAATATGAGCCAGTAA	2520	0.473	MVDGAVLPEAEHEPPPNPYRCRPPPPPSNNAFAALISILIFYMHPFCCVSAISDQASPVKPSFADFPMPPLPAAAAAAAVRSDSAPRHSHKHSHSGSQREQPVDVKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNPETEKGSMVIGEESMRRITRNRNSYPCQHVSTIRESKSDDKRFSVFTGTKRLHLRADTHEDRVSWTEALQAVKDMFPRMSNSELMAPLDNVTVSTEKLRLRLMEEGVSEGTIQDSEQIMRTEFAALQSQLVLLKQKHSILIDTLRQLETEKVDLENTVVDESQRQWNDEEASSRLAQEKFSGTGSESEDDNDRNDAAEEETDDDDNAFFDTRDILSSSSFKSNGSDYRMSSFSSDDEGFYAFESEDDIDPSIRYVGTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRRGNSLMRILYVAAFAVSGYAATEGRVCKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRNPHQVHGIIQDRNGKTVSTLFGKWDESMYYVNGDYTGKGKGHESLSDARLLWKRSKAPKIPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYDMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYVGGYWEARQRGNWDSCPDIFGQIPSSDHISDEGQITFYQFAVMCTHEIHVTQSGENMSQ	839

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g02208	839	Gene3D	-	114	238	IPR011993	-
	Vimu10g02208	839	Gene3D	-	520	700	-	-
	Vimu10g02208	839	CDD	PH_ORP_plant	115	236	-	-
	Vimu10g02208	839	MobiDBLite	consensus disorder prediction	318	363	-	-
	Vimu10g02208	839	MobiDBLite	consensus disorder prediction	84	99	-	-
	Vimu10g02208	839	ProSiteProfiles	PH domain profile.	112	229	IPR001849	-
	Vimu10g02208	839	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vimu10g02208	839	Pfam	Pleckstrin homology domain	120	225	-	-
	Vimu10g02208	839	SUPERFAMILY	PH domain-like	115	229	-	-
	Vimu10g02208	839	FunFam	Oxysterol-binding protein-related protein 2A	731	802	-	-
	Vimu10g02208	839	SUPERFAMILY	Oxysterol-binding protein-like	429	805	IPR037239	-
	Vimu10g02208	839	Pfam	Oxysterol-binding protein	434	788	IPR000648	GO:0008289
	Vimu10g02208	839	Gene3D	-	731	838	-	-
	Vimu10g02208	839	SMART	PH_update	113	231	IPR001849	-
	Vimu10g02208	839	FunFam	oxysterol-binding protein-related protein 1D isoform X1	520	692	-	-
	Vimu10g02208	839	Coils	Coil	292	319	-	-
	Vimu10g02208	839	MobiDBLite	consensus disorder prediction	346	362	-	-
	Vimu10g02208	839	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	114	788	IPR000648	GO:0008289
	Vimu10g02208	839	MobiDBLite	consensus disorder prediction	77	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g02208	Vimu-Chr10	32409293	32416188	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g02208	K20456		-	gmx:100137077	1450.65

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g02208	10	32409293	32416188	Vimu10g02208	10	32409293	32416188	ECH