Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02207 ATGCTGTTGCGCAACCCTTCGTGGACAGCGTCGTTGCTATCAGCCACCACAAGAAGGCTCTACAACCACCGCCTTTCTACATCTTCGTTCATGGCGTCTTCAGCTTTAGACTGCAGTTTGCTAGTTTTGTGTGGAAAATCATTGGCAGAGAATGAAACTGCCAAAGCTATAAAAACCAGTAACACTCTCAAGCTCCCCGAGAATGGAGAATACTCCCTCGTTTTGCATTCGCAGCTAGATAAAACTGTTATGCAAGGGTCTTTTCAAATTCACTCCTATATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCATCTGGTCCCCTCAGTTAACTTCCACACAAGATATCGTTTCACAAAACTTCTGTGAGCTTCCCATTGGTACAGTTTGTGTCGCTGATGTTCAGACCAAGGGACGAGGTCGGTCTAAGAATGTCTGGGAATCTCCATCGGGTTGCCTTATGTTTTCTTTTACTTTGCAAATGGAGGATGGACGAGTCGTTCCTTTAGTTCAGTATGTGGTTTCCCTTGCTATCACAGAGGCAGTGAAGGATATCTGTTACAAAAATGGGTTACCCAGCATAGATGTTAAAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTCTAAAGTTGGAGGCATTCTTTGCACCTCGGCATATAAATCAAAGAAGTTCAATGTTAGTGCAGGAATAGGTTTGAATGTCAATAATGAGAAGCCAACAACGTCCTTAAATACAGTTCTAAAAGAGTTGTCTACTGGAGCTTACCAATTTCAAAGAGAAGATATTCTAGCAGCCTTTTTTAACAAATTTGAGGAGTTTTATGGTTTATTTGTGAATCAAGGATTTCAGACCCTAGAGGAGCTCTATATTAAGACATGGTTGCACAGTGGACAGAGAGTTGTTGTACAAGAAAAGAATGGGGATAAAGTGATCGAGCACGTCGTAACTATTCAGGGTTTGACATCATCTGGATATTTATTAGCTGTCGGTGATGACAATCAAATGTGTGAGCTCCACCCTGATGGTAATAGGACTAGTCAGAAGAAAACTCGACTGAACAAGATTCCTTGA 1080 0.4157 MLLRNPSWTASLLSATTRRLYNHRLSTSSFMASSALDCSLLVLCGKSLAENETAKAIKTSNTLKLPENGEYSLVLHSQLDKTVMQGSFQIHSYMDSLSTNQFGRLLIWSPQLTSTQDIVSQNFCELPIGTVCVADVQTKGRGRSKNVWESPSGCLMFSFTLQMEDGRVVPLVQYVVSLAITEAVKDICYKNGLPSIDVKIKWPNDLYLNGSKVGGILCTSAYKSKKFNVSAGIGLNVNNEKPTTSLNTVLKELSTGAYQFQREDILAAFFNKFEEFYGLFVNQGFQTLEELYIKTWLHSGQRVVVQEKNGDKVIEHVVTIQGLTSSGYLLAVGDDNQMCELHPDGNRTSQKKTRLNKIP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02207 359 Pfam Biotin/lipoate A/B protein ligase family 110 236 IPR004143 GO:0036211
Vimu10g02207 359 NCBIfam biotin--[acetyl-CoA-carboxylase] ligase 109 333 IPR004408 GO:0004077|GO:0036211
Vimu10g02207 359 Gene3D Bira Bifunctional Protein; Domain 2 94 295 IPR045864 -
Vimu10g02207 359 PANTHER BIOTIN PROTEIN LIGASE 35 346 - -
Vimu10g02207 359 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 91 281 IPR004143 GO:0036211
Vimu10g02207 359 SUPERFAMILY Class II aaRS and biotin synthetases 93 296 IPR045864 -
Vimu10g02207 359 Pfam Biotin protein ligase C terminal domain 298 346 IPR003142 GO:0036211
Vimu10g02207 359 CDD BPL 106 280 IPR004408 GO:0004077|GO:0036211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02207 K01942 - gmx:100818402 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02207 10 32389544 32394558 Vimu10g02207 10 32389544 32394558 ECH