Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02202 ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACCTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCTGCAACTGGAAAACTATCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGCACTTGCTCTCAAAATCACCACTTGTGTGGCACAAGTACTACTGACACTACCATATTCCTTTTCACAACTGGGGATGGTATCTGGAATCATATTTCAGCTTTTCTATGGACTCATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACCGAACCAGAAAAGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTCGATGGACTTCTGGGAAAACACTGGAGAAATCTTGGTCTTTTTTTTAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAGAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACGGTGTTCATCCCTTCTTTCCACAATTACAGAATCTGGTCATTCTTAGGGCTCATGATGACCACTTATACTGCATGGTATATGACCATAGCTTCCCTTACCAACGGCCAGGTGGAGGGGGTGACGCACTCTGGGCCAACCAAATTGGTTCTTTACTTCACTGGGGCTACCAACATTCTCTATACTTTCGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGTTGACCCTAACTTTGCCATCAGCAGCTGCAGTTTACTGGGCATTTGGGGATCAGCTTCTTACCCATTCTAATGCCCTCTCATTGCTCCCAAAGACAGGCTTCAGAGACACTGCTGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCCTGCACTCCCTTATACTTTGTGTGGGAGAAATTCATCGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGGGCGTTGGCTAGACTTCCTGTAGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTTCTTGTCAGCTTCACTGTTTACATTATTCCTGCCTTGGCTCACATGATGACCTTTGCTTCGGCACCAGCTAGGGAGAATGCTGTGGAGAGACCACCATCAAGGTTAGGAGGTTGGGTAGGATCGTACGCGATGAACGTGTTTGTGGTGGTGTGGGTTTTGGTGGTAGGATTTGGATTGGGAGGATATGCAAGCATGATTAACTTCATACACCAAATTGACACGTTTGGGCTATTTGCAAAGTGCTATCAGTGTCCCCCTCACAAGGCTTAA 1425 0.44 MASEKVETVVAGNYLEMEREEEGSKSATGKLSRLFWHGGSVYDAWFSCASNQALALKITTCVAQVLLTLPYSFSQLGMVSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLMMTTYTAWYMTIASLTNGQVEGVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSAAAVYWAFGDQLLTHSNALSLLPKTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMMTFASAPARENAVERPPSRLGGWVGSYAMNVFVVVWVLVVGFGLGGYASMINFIHQIDTFGLFAKCYQCPPHKA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02202 474 Pfam Transmembrane amino acid transporter protein 52 437 IPR013057 -
Vimu10g02202 474 PANTHER OS05G0424000 PROTEIN-RELATED 43 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02202 Vimu-Chr10 32346811 32349056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02202 1 473 Organic Solute Cotransporters AT1G77690 86.192 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02202 K13946 - gmx:100815243 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02202 10 32346811 32349056 Vimu10g02202 10 32346811 32349056 ECH