Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02188 ATGCTAACTTCCCATATATACTCACTCATGAGATTCAAGCCTTCATCAAAGTTCTTAGGCTTTTCAAATCACTTCCACAGTGTTATCGCACCCTCTGTTTCTCTAACCCCAAAGTTCCCATCTTCCATTGCTGCCACCATGTCCACTCAGAACGACACCGTCACCCTCAAAACGCATCAACCTTTGCAAATTGCAAAGCGCTTAGAGAAATTTCAGACAACTATCTTCACTCAAATGAGCTTGCTAGCCATCAAACATAAAGCCATAAACCTTGGTCAAGGCTTTCCCAACTTTGATGGTCCAGAGTTTATAAAGGAAGCAGCAATTCAAGCAATAAGGGATGGGAAAAATCAGTATGCCCGGGGTTATGGAGTTCCAGACCTTAACATTGCCATTTCTGAGAGATTTAAGAAAGATACTGGATTAGTGGTAGATCCTGAAAAGGAAGTTACTGTTACATCTGGATGCACTGAGGCTATTGCTGCAACTATACTAGGATTAATAAATCCTGGTGATGAGGTTATTATGTTTGCTCCATTTTATGATTCTTATGAGGCCACTTTGTCTATGGCCGGTGCAAAAGTCAAAAGCGTTACTTTGCGCCCGCCCGATTTTGCTGTCCCTATTGAAGAGCTGAAGTCCATAATCTCAAAGAATACCCGTGCCATTCTTATAAATACACCTCACAACCCAACTGGAAAGATGTTCACTCGCGAGGAGCTTGATTGCATTGCATCTCTTTGCATTGAGAATGATGTTCTGGTTTTCACTGATGAGGTCTATGATAAGTTGGCTTTTGATATGGAGCACATTTCGATGGCTTCTTTGCCTGGAATGTACGAAAGGACAGTGACAATGAATTCCTTGGGAAAGACATTCTCCTTAACCGGATGGAAAATTGGTTGGGCAATAGCACCCCCACATTTAACATGGGGAGTGCGTCAGGCACACGCATACCTCACTTTTGCAACCTCCCATCCTTTCCAGTGTGCTGCTGCGGTAGCTCTGAGAGCATCAGACTCTTATTATGAAGAGCTGAAGAGGGATTATATGGCAAAAAGAGCTATTTTGGTTGAGGGATTGAAGGCTGTTGGCTTCAAGGTATTCCCATCCAGTGGAACCTACTTTGTGGTTGTAGATCACACCCCTTTTGGACTGGAAAATGATATTGCATTTTGTGAATATCTAGTTAAGGAGGTGGGAGTAGTGGCAATTCCTACTAGTGTATTTTATTTGAATCCAGAAGAGGGAAAGAATCTTGTCAGATTCACGTTTTGCAAGGATGAGGGAACTATTAGGTCTGCTGTTGACAGGATGAAAGAGAAGCTTAAAAAATGA 1338 0.4238 MLTSHIYSLMRFKPSSKFLGFSNHFHSVIAPSVSLTPKFPSSIAATMSTQNDTVTLKTHQPLQIAKRLEKFQTTIFTQMSLLAIKHKAINLGQGFPNFDGPEFIKEAAIQAIRDGKNQYARGYGVPDLNIAISERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVIMFAPFYDSYEATLSMAGAKVKSVTLRPPDFAVPIEELKSIISKNTRAILINTPHNPTGKMFTREELDCIASLCIENDVLVFTDEVYDKLAFDMEHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAYLTFATSHPFQCAAAVALRASDSYYEELKRDYMAKRAILVEGLKAVGFKVFPSSGTYFVVVDHTPFGLENDIAFCEYLVKEVGVVAIPTSVFYLNPEEGKNLVRFTFCKDEGTIRSAVDRMKEKLKK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02188 445 FunFam Aminotransferase, class I/classII 101 339 - -
Vimu10g02188 445 Pfam Aminotransferase class I and II 88 438 IPR004839 GO:0009058|GO:0030170
Vimu10g02188 445 Gene3D - 101 339 IPR015421 GO:0003824
Vimu10g02188 445 SUPERFAMILY PLP-dependent transferases 63 444 IPR015424 -
Vimu10g02188 445 PANTHER FI04487P 64 444 - -
Vimu10g02188 445 Gene3D Aspartate Aminotransferase, domain 1 78 439 IPR015422 GO:0003824
Vimu10g02188 445 CDD AAT_like 89 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02188 Vimu-Chr10 32153395 32155557 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02188 K23977 - gmx:100818968 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02188 10 32153395 32155557 Vimu10g02188 10 32153395 32155557 ECH