Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02154 ATGAATGCCTATATTTTCGGTATCGTTGTTCCTCTCCTCGTCATCCTCTTCCGAACCCGCAGTTCCACCAAGCGCCGCGGCCTCCCAGCCGACGTTGGCGGCGAGCGCGGCCTCGCGCTGCGGAACCACCGCTTCACTTCGCCACTCAGTTCTGCCTGGGAGGGCGTCACGACGCTGGCGGAGCTCTTCGAGCGCGCATGCAGGGAGCATCATGACCGTGTGCTGCTCGGCACGCGCGTGGAGATCGCGCGTGAAGTGGACTTCTCTTATGGTAGAAGACTCGAGAAGCTTCACCTGGGGGACTACCACTGGCTTACTTACGGGAGAGTCTTCGAATCCGTCACGAGTTTCGCTTCCGGTTTGGCGTTGCTCGGTCATCGCAAGGAAGAGCGCGTGGCTATATTCGCTGAAACCAGAGATCGTTGGTTTATTGCACTGCAGGGATGCTTCCGGAGGAATGTTACAGTTGTGACCATATATTCGTCATTGGGAGAGGAAGCTTTGTGTCACTCGTTGAATGAGACAGATGTCACAACAGTGATATGTGGGCGCAAAGAATTGACGTCACTAGTACATATCAGTAGTCAACTTGATTCTGTGAAACGTGTTATATGCATTGACGACGACAAGATTTCATCTGATTTGTTTGCTCAGACTGGATGGAAAATCACTTCCTTTGCTGACGTTGAGAGCCTTGGTAGAGACAATCCTGTTGAGGCTGATTTACCCCTTTCAGCCGATGTTGCAGTTATAATGTACACAAGTGGAAGTACAGGATTGCCCAAGGGTGTAATGATGACACATGGCAATGTCTTGGCAACAGTCTCTTCGATAATGATTATAGTTCCTAACCTTGGGCCAAAGGATGTCTATCTTGCCTACTTACCGATGGCTCACATCCTTGAATTAGTAGCTGAGAATTTGATTGCAGCTGTTGGAGGTAGTATAGGATATGGAACTCCCTTGACTTTAACTGATACATCAAACAAAATAATGAAGGGGAAAAGGGGGGATGCCACTGCATTGATGCCAACTGTGATGGCAGCTGTACCAGCAATTCTTGATCGTGTACGGGAAGGAGTGCTCAAGAAGGTAAATGCAAAAGGAGGATTGTCAAAGAAATTGTTTTATTTAGCCTTTGCACGAAGGTTGCCTGCACTTAATGGTAGCTGGTTTGGTGCTTGGGGCTGGGAAAAAGCTCTATGGAATCTTCTTGTGTTCAAGAAGGTTCAAGCAATTTTGGGTGGTCGCATTCGGTTTATACTATGTGGTGGTGCTCCACTTTCTGGTGACACCCAAAGATTCATCAACATTTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTCACTGAGACTTGTGCTGGTGGGACATTCTCTGATTTCGACGATACGTCTGTGGGCCGTGTTGGGCCACCTATTCCTTGCTCATATATTAAACTAATTGACTGGCCCGAAGGTGGATATTCAACTAATGACTCGCCCATGCCCCGTGGTGAAATTGTGATTGGAGGTCCAAATGTCAGTCTTGGTTACTTCAAAAATGAAGAAAAAACAATAGAATCTTACAAGGTTGATGAAAGAGGAGTAAGGTGGTTCTACACTGGTGATATCGGGAGATTTCATAAAGATGGTTGCATTGAGATCATTGATCGGAAAAAGGACATAGTTAAACTCCAGCATGGAGAATATGTGTCCTTGGGAAAGGTGGAGGCAACTCTTTCTACCAGTCCCTACGTCGACAATATCATGTTGCATGCTGACCCTTTTCATAGCTATTGTGTGGCACTTGTCGTAGTTTCTCATCCGGCATTGGAGCAATGGGCTTCACAGCAAGGAATTGATTATTCTAATAATTTTTCAGAACTGTGCAGGAAAGAAGAAACTGTGAAGGAGGTGCATGCATCACTTTTAAAGGAAGCAAAGAAGGGTCGTCTGGAAAAATTTGAGATTCCTGCAAAAATTATTTGCATTTCTGACCCATGGACTCCTGAAACTGGCCTAGTCACTGCAGCTCTTAAGCTGAAGAGAGAGGTAATTAGAAAGGCCTTTCAAGAGGAGCTTTCAAAGTTATATGCCTCCGTCTAG 2088 0.4646 MNAYIFGIVVPLLVILFRTRSSTKRRGLPADVGGERGLALRNHRFTSPLSSAWEGVTTLAELFERACREHHDRVLLGTRVEIAREVDFSYGRRLEKLHLGDYHWLTYGRVFESVTSFASGLALLGHRKEERVAIFAETRDRWFIALQGCFRRNVTVVTIYSSLGEEALCHSLNETDVTTVICGRKELTSLVHISSQLDSVKRVICIDDDKISSDLFAQTGWKITSFADVESLGRDNPVEADLPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSSIMIIVPNLGPKDVYLAYLPMAHILELVAENLIAAVGGSIGYGTPLTLTDTSNKIMKGKRGDATALMPTVMAAVPAILDRVREGVLKKVNAKGGLSKKLFYLAFARRLPALNGSWFGAWGWEKALWNLLVFKKVQAILGGRIRFILCGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPIPCSYIKLIDWPEGGYSTNDSPMPRGEIVIGGPNVSLGYFKNEEKTIESYKVDERGVRWFYTGDIGRFHKDGCIEIIDRKKDIVKLQHGEYVSLGKVEATLSTSPYVDNIMLHADPFHSYCVALVVVSHPALEQWASQQGIDYSNNFSELCRKEETVKEVHASLLKEAKKGRLEKFEIPAKIICISDPWTPETGLVTAALKLKREVIRKAFQEELSKLYASV 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02154 695 ProSitePatterns Putative AMP-binding domain signature. 251 262 IPR020845 -
Vimu10g02154 695 Pfam AMP-binding enzyme 99 560 IPR000873 -
Vimu10g02154 695 SUPERFAMILY Acetyl-CoA synthetase-like 55 692 - -
Vimu10g02154 695 Gene3D - 49 552 IPR042099 -
Vimu10g02154 695 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 40 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02154 Vimu-Chr10 31721166 31729739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02154 24 693 Acyl Lipid Metabolism Gene Families AT2G04350 62.018 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02154 K01897 - gmx:100778889 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02154 10 31721166 31729739 Vimu10g02154 10 31721166 31729739 ECH