Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02146 ATGGGCTGCTGCTATTCATCTTCAAAGAGAACCGGAACGCCAGGTTATGAGGAACCCACCGTTCTTGCATCTCAGACACCTTGTGAGTATCATGATCCATCAATGAATGGTAAATCCTTGCTGCTTTTCTGTTCAAATTTTGATTTGGCTTCTGCTAAGAGCCATCAAGTTACTGTTAATGAAGTAGAAGCCTTGCATGAGCTCTTCAAGAAGTTGAGCAATTCCATTATTGAAGATAATCTTATTCACAGGGAAGAATTCCAGTTGGCACTATTCAGGAACAGAAACAAGAAAAATCTGTTTGCAGATAGGATTTTTGACTTGTTTGATGTCAAGCGCAATGGGGTCATTGAGTTCGGCGAATTTGTTCAATCATTGGGTATTTTTCACCCAAATGCACCTTTAGAAGACAAAATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATTCAAAGAGAAGAGTTGAAGGAGATGGTATTGGCACTTCTGCACGAGTCGGATCTTGAGCTTTCAGATGATATGATTGAAAGCATTGTGGACAAGACTTTTAGTGATGCTGATATAAATGGTGATGGAAAGATAGATCAAGAAGAGTGGAAAGCATTTGTATCCAAACATCCATCCTTGATAAAGAATATGACACTTCCATATCTGAAGGATATTACGTTGGCATTTCCAAGTTTTGTTGTAAGAACAGATATTGAAGAGTCGGATATGTGA 732 0.3866 MGCCYSSSKRTGTPGYEEPTVLASQTPCEYHDPSMNGKSLLLFCSNFDLASAKSHQVTVNEVEALHELFKKLSNSIIEDNLIHREEFQLALFRNRNKKNLFADRIFDLFDVKRNGVIEFGEFVQSLGIFHPNAPLEDKITFAFRLYDLRQTGFIQREELKEMVLALLHESDLELSDDMIESIVDKTFSDADINGDGKIDQEEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVRTDIEESDM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02146 243 CDD EFh 138 208 IPR002048 GO:0005509
Vimu10g02146 243 SUPERFAMILY EF-hand 53 231 IPR011992 -
Vimu10g02146 243 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
Vimu10g02146 243 FunFam calcineurin B-like protein 3 48 240 - -
Vimu10g02146 243 PANTHER CALCINEURIN B 2 240 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu10g02146 243 Pfam EF-hand domain pair 137 206 IPR002048 GO:0005509
Vimu10g02146 243 ProSiteProfiles EF-hand calcium-binding domain profile. 178 213 IPR002048 GO:0005509
Vimu10g02146 243 PRINTS Recoverin family signature 152 170 - -
Vimu10g02146 243 PRINTS Recoverin family signature 105 126 - -
Vimu10g02146 243 PRINTS Recoverin family signature 198 218 - -
Vimu10g02146 243 SMART efh_1 182 210 IPR002048 GO:0005509
Vimu10g02146 243 SMART efh_1 101 129 IPR002048 GO:0005509
Vimu10g02146 243 SMART efh_1 138 166 IPR002048 GO:0005509
Vimu10g02146 243 ProSiteProfiles EF-hand calcium-binding domain profile. 97 132 IPR002048 GO:0005509
Vimu10g02146 243 ProSitePatterns EF-hand calcium-binding domain. 191 203 IPR018247 -
Vimu10g02146 243 Gene3D - 52 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02146 Vimu-Chr10 31488040 31490390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02146 57 243 EF-hand Containing Proteins AT5G24270 74.866 4.85e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02146 K06268 - gmx:100811649 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02146 10 31488040 31490390 Vimu10g02146 10 31488040 31490390 ECH