Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02134 ATGAGTGTGTCACACGCTAGGGAAAAGTCTAGTACAGGCGACGTTGAAAAACCTGGGATTAGGGAAACAGATGAAGTGAAACCTGAGACTGGATTGTCCCACAACATTGTTTTTGTGACTGCTGAAGCTGCGCCATATTCCAAGACAGGTGGTCTTGCTGATGTTTGTGGCTCTTTGCCAATTGCTCTGGCGGCTCGCGGGCACCGTGTGATGGTTGTCACGCCCAGATACATTCATGGTACTTCTGGGGACGCTAAGTTTTCTGGGGCAGTTGATCTGAAACGAGGCATCAAAGTGCCGTGCTTTGGAGGTGCTCAAGAAGTTGGCTTTTTCCATGAGTATAGGGAAGGGGTTGATTGGGTATTTGTGGACCACCCCTCGTTCCAGAGACCAGGGAATCCGTATGGAGACAAGTTTGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCATGTGAAGCGCCATTGGTGCTTCCATTAGGGGGGTTCACTTATGGAGAAAAATGTTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCAGTACTTTTGGCAGCAAAGTATCGTCCACATGGGGTATATAAAGATGCTCGAAGTATATTAGTGATACACAATATAGCACATCAGGGAGTGGAACCTGCAATTACATACGGTAATTTGGGGCTACCTGCAGAATGGTATGGAGCACTGGAATGGGTGTTCCCTAATTGGGCAAGGACGCATGCTCTTGACACAGGTGAAGCTGTCAACTTTCTAAAAGGTGCTGTGGTTACAGCTGACCGGATTGTGACAGTAAGCAAGGTCCTAATACCGCAAACTACATATTCTGCTCTTCTATTTTATCGTGTCAAATATTGGGGCTATTCCTGGGAGATAACTACCAGTGAAGGTGGATACGGTCTACATGAATTATTACATAGTCGAAAAAGTATTCTCAATGGGATCACAAATGGAATCGATGTCACTGAATGGGACCCATCACGTGATAAACATATTGCTTTCAACTACTCTGTTGATGATCTTTCCGGGAAGGCCCAATGCAAGTTTGCTCTGCAGCAGGAATTGGGTCTTCCAGTGAGGCTTGATTGTCCATTGATTGGGTTTATTGGAAGACTGGACTACCAGAAAGGTATTGACTTGATCCGCTCTGCAATGCCGGAGCTCATGGAAGCTGATGTTCAGTTTGTAATGCTTGGTTCAGGAAACCCTATTTATGAAGATTGGATGAGAGCAACAGAGTCAACTTATAGAGATAAATTTCGGGGCTGGGTGGGATTTAATGTTCCAATATCTCATAAAATAACTGCAGGCTGTGATATATTGTTAATGCCATCTGCATTCGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCCGTGGTTCATGAAACTGGGGGCCTAAGAGATACTGTTCACAATTTTAATCCGTTTACTGAAGAGGGCAAAACTGAAAGCACTGGGTATGTTGCTCTAAGATATGCCATTCAAACATACAAAGAACACAAGTCTTCGTGGGAGGGATTGATGATAAGAGGCATGAAAAAAGACTACACATGGGTAAATGCTGCTACTCAGTATGAACAAATCATCAACTGGGCATTCATCGACCCTCCCTATTGCTGA 1656 0.4457 MSVSHAREKSSTGDVEKPGIRETDEVKPETGLSHNIVFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVVTPRYIHGTSGDAKFSGAVDLKRGIKVPCFGGAQEVGFFHEYREGVDWVFVDHPSFQRPGNPYGDKFGTFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPVLLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYGNLGLPAEWYGALEWVFPNWARTHALDTGEAVNFLKGAVVTADRIVTVSKVLIPQTTYSALLFYRVKYWGYSWEITTSEGGYGLHELLHSRKSILNGITNGIDVTEWDPSRDKHIAFNYSVDDLSGKAQCKFALQQELGLPVRLDCPLIGFIGRLDYQKGIDLIRSAMPELMEADVQFVMLGSGNPIYEDWMRATESTYRDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFNPFTEEGKTESTGYVALRYAIQTYKEHKSSWEGLMIRGMKKDYTWVNAATQYEQIINWAFIDPPYC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02134 551 Pfam Starch synthase catalytic domain 35 273 IPR013534 -
Vimu10g02134 551 Pfam Glycosyl transferases group 1 370 511 IPR001296 GO:0016757
Vimu10g02134 551 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 15 550 - -
Vimu10g02134 551 CDD GT5_Glycogen_synthase_DULL1-like 35 540 - -
Vimu10g02134 551 Gene3D Glycogen Phosphorylase B; 30 345 - -
Vimu10g02134 551 FunFam Starch synthase, chloroplastic/amyloplastic 327 527 - -
Vimu10g02134 551 Gene3D Glycogen Phosphorylase B; 346 525 - -
Vimu10g02134 551 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g02134 551 MobiDBLite consensus disorder prediction 9 26 - -
Vimu10g02134 551 Hamap Glycogen synthase [glgA]. 34 544 IPR011835 GO:0004373
Vimu10g02134 551 FunFam Starch synthase, chloroplastic/amyloplastic 35 282 - -
Vimu10g02134 551 NCBIfam glycogen/starch synthase, ADP-glucose type 35 540 IPR011835 GO:0004373
Vimu10g02134 551 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 30 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02134 Vimu-Chr10 31350901 31357723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02134 11 541 Glycosyltransferase AT3G01180 47.253 8.68e-158 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02134 K00703 - gmx:100807354 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02134 10 31350901 31357723 Vimu10g02134 10 31350901 31357723 ECH