Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02116 ATGCTATCATTGTGTGAGTTGAAAAGCATATCATGCTTCTCAGCTTGTAATCAAAAGCAAAATTACAGTCAAAAGCTTTACATTATTCCAACTAAGACTGCTTCGGTTCGGGTCTGCATCTCAAGATCTTCAGTTGGGTCATTGGAATGTGGTGGGACAGGCCCGCATAGTGATGCTTATTCAGGATTTTCAGCTCCAAATGACCATCAGAGAATTGGCAGTTTAGAAAGAGAATTGGAAGAATTATTTGATGAAGTGAAAAGAATGATCAGGATGGGAAATAAAAGTGATGCTATAGACCTGCTAACTGCGAATTACGAAGCAGTCAAAGAGAGCCTGAATGCAGGTACTAAAGGCATAGAAGAAGCTGCAATTTTGGATGTTATAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTTTGTTGGATATGATGAAAGAAATTGTTGACAATTTGAAGGATGATGCACCTCGTCTGGATTCAATACTTATGCATATGGGAAGTATGTATGCAACATTGAACATGTTTGAAAAATCATTGGACACATATCAGAGGGCTGTCTACATTATGGAGGGGACCTACGGTAAGGATAGTACTTTACTTATCACACCTTATTTGGGTATGGCAAAAGTTCTTGGCTCTTTCGGAAAAGCAACAAAAGCAATAGAGATTTACCAGCTTGTGATCACTCTTTTGGGATCAAGTAGAGGTGCCCAAAGTAAGGATTTGGTCGTACCTTTACTTAGCCTCGGCAATCTTTTACTCAAAGAAGGGAGAGCCGATGATGCTGAAACTCATTTTACTAGAGTTCTCGACATATACACTAAATTATATGGACAAAATGATGGAAGAATTGGAATTGCTATGAGTTCCCTAGCCCGTGTTAAGAGTGCCCAAGGGAAATCAGATGAAGCAATACAATTGTTTAAACTTGCTATTCAGGTCATGAAGGATTCAAATTACTTGTCACCAGATGACAGTATATTGGAAAAGATGAGGGTGGATCTAGCTGAATTACTTCATGTCGCTGGGAGAGGACAAGAAGGCAGAGAGGTATTAGAGGAGTGTTTGTGGATCACTGAGAAGCACAAAGGAAAGGAGCACCCAATCCTGGTGACACACATGATAAATCTTGCAACTTCGTATTCACGGTCAAAGAATTATGCAGATGCCGAGCACCTGTTGAGAAGAAGTTTGCAAATCATGATAAAGCAGAAGGGAACTGATGACCAGTCCATCAGCTTTCCTATGTTACATCTTGCAGTTACACTCTACCATTTGAAAAATGATGAAGAAGCAGAGAAACTTGCCCTGGAGGTTTTACGCATCCGTGAGAAGGCCTTTGGAAAAAATTCCCTTCCTGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGTAAGGATGACAGTGAATTACTCGGGTTGCTTAGAAGGATCCTGAATATCCAAGAAAGAGAATTTGGATATGAAAGTGAGGAGATTTTGGTTACGCTGAAAAAAATTGTATACTACTTGGATAAATTAGGGAAAAAAGATGAAAAGCTTACACTTCACAGAAGATTGTCTGTGCTTAGGAAAAAGTATAACCAGATGGTTAATTATTAA 1629 0.3947 MLSLCELKSISCFSACNQKQNYSQKLYIIPTKTASVRVCISRSSVGSLECGGTGPHSDAYSGFSAPNDHQRIGSLERELEELFDEVKRMIRMGNKSDAIDLLTANYEAVKESLNAGTKGIEEAAILDVIALGYMAVGDLKFVGSLLDMMKEIVDNLKDDAPRLDSILMHMGSMYATLNMFEKSLDTYQRAVYIMEGTYGKDSTLLITPYLGMAKVLGSFGKATKAIEIYQLVITLLGSSRGAQSKDLVVPLLSLGNLLLKEGRADDAETHFTRVLDIYTKLYGQNDGRIGIAMSSLARVKSAQGKSDEAIQLFKLAIQVMKDSNYLSPDDSILEKMRVDLAELLHVAGRGQEGREVLEECLWITEKHKGKEHPILVTHMINLATSYSRSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKNDEEAEKLALEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGKDDSELLGLLRRILNIQEREFGYESEEILVTLKKIVYYLDKLGKKDEKLTLHRRLSVLRKKYNQMVNY 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02116 542 ProSiteProfiles TPR repeat profile. 164 197 IPR019734 GO:0005515
Vimu10g02116 542 SUPERFAMILY TPR-like 165 405 IPR011990 GO:0005515
Vimu10g02116 542 SMART tpr_5 290 323 IPR019734 GO:0005515
Vimu10g02116 542 SMART tpr_5 206 239 IPR019734 GO:0005515
Vimu10g02116 542 SMART tpr_5 418 451 IPR019734 GO:0005515
Vimu10g02116 542 SMART tpr_5 164 197 IPR019734 GO:0005515
Vimu10g02116 542 SMART tpr_5 248 281 IPR019734 GO:0005515
Vimu10g02116 542 SMART tpr_5 376 409 IPR019734 GO:0005515
Vimu10g02116 542 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 71 525 - -
Vimu10g02116 542 Coils Coil 72 92 - -
Vimu10g02116 542 Pfam MalT-like TPR region 164 445 IPR041617 -
Vimu10g02116 542 Gene3D Tetratricopeptide repeat domain 90 330 IPR011990 GO:0005515
Vimu10g02116 542 Gene3D Tetratricopeptide repeat domain 331 540 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02116 - - gmx:100805230 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02116 10 31143198 31152823 Vimu10g02116 10 31143198 31152823 ECH