Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02112 ATGGAACGTTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAGACCGTGGCCAGGACCAGGCCGCGCTATAACCACCACTACAGCGCCGGCGCCGGGAACCACCGCCACCGCGGGGGAGGCGCCCGTCATGCAAAGGCGCAGGACTCACAGCTCAGTGTCACAACCAGCTACCGCATTCTGTGCCACGATATGAAGGCTGGCGGCGTGATAGGAAAGTCCGGCAGCATTATAAAGTCCATAAGACAGCACACCGGCGCGTGGATCAACGTGCACGAGCTCATGCCTGGGGATGAGGAGCGGATCATCGAGATTTCGGACACGCGCCGGCGAGACCCCGAGGGGAGAATGCCAACGTTCTCGCCGGCGCAGGAGGCGCTGCTGCTGATCCACGAGCGGATTCTGGAGAGCGACGCGGCGTTCGGGGTGGCGGAGGAGGAGGAAGAGTACGGCGGGAGGGGCGGCGGCGGCGGCGGGAGAGACCGCGTGGCGACGAGGCTGGTGGTGTCGAGAATGCATGTGGGGTGTTTGTTGGGGAAGGGAGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACGCAGATTAGGATACTCCCTAGAGATCACAACCTTCCCCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGCATTACAATGCCTATTTGAAGATAACATCTTTTATACTGCTTTCAGTCATGATGTTGATATGAGAAATAGGGAGATGTATGATTTTGCTTGGCCATTCTATAGAAATGTAGTAGGTGATGTAAATGCTGTAAAGGATGCTATAGCTAATATATCATCACGGTTGAGGGAGAGTCAGCACCGGGACCGTAGTCATTTCCATGGACGTGTACATTCACCAGAGCGATTTTTCTCTCCCGACAATGATTATATTCCTCATGTGACTAGTGGATCTCGTAGATCATCCGTGGATGGGGCCACTTTTGGATCACGAGGTTCTAATACAACTAGCAGAAACAATAGTCACTCTGCAATGAATTATTTAATGGAGCCTGGGGCTGCTCCTGTTGCCGATGACGTGCAGGGCTACTATGGGGAGGAACTGGTTTTCCGTGTACTCTGTCCAGTTGAGAGAGTTGATCGTATAATTGGGGAATCAGGTGGAATTGTAGAGTTCCTTCAGAATGAGGTTGGTGTAGATGTTAAGGTCACTGATCCTGTTGGTGGTTCGGATGAACAGATAGTTATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAAGAAGCTTTGTTACATATACAAACCCGCATTGTCGATCTTATTCTAGATAAAGACAATACTATAACCACCAGGCTTGTTGTCCCATCCAATGAAATTGAATGCTTAGACGGAAAGGATGCTACACTTTCAGAAATAAGGAGGTTGACTGGTGCTAATATTCAAATTTTGCCCAGAGACGAGCTACCTCCCTGTGTTGCAAAAACCGATGAACTTGTACAGGCAGAAGCCTCATGCACCCAGTATAGAGAGGATCCAAAGCCTTACCTTCCTATTGTAGGAGAGATTAAAGCAGCCCGAGATGCTGTTGTGGAGGTGACTTCAAGATTAAGAAGTTATTTGTACAGGGATTTCTTTCAAAGGGACATAGTACCACAAGTTTCATTGCCTGGTGTGGAGGCATCTTCTTCCAATAATTTAGTTCCAGTTACTGAAACTCTCACGACCTATCAAAATATGCAAACTGTTGCCGCAGCCCTTCCATTAAAGGAAACTGGAGGATCTAGCACTGAGATAGGAAAGCAGAAAGAAAGTGATCGCCGCGATGATGTGCTTAGTGGTTTAAATAGGATTGCTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTATACCAGAGTATGCAGTACCAAAGCTTATAGCAAAATCCAAAAGCAAGCTTTCCCAAATAAGTGAGTTATCAGGAGCCAATGTAACCCTAGTAGAGGATAGACCAGACGTGACGCAGAAGATTATTCAGATATCTGGAACTCCAGAGCAGGCAGAGCGAGCCCAGAGCTTGCTGCAAGGGTTTATTTTGAGCAGTAAGTCCTTATGTCACAAGAAGACGGCCCTTAAACTACTGAAATTCCGAAAGCTGTGCCTGAAGCATTTTGTTCCATGCACTGATTGGATTTCCATGTGTTTACAAGATTGTTGTGGCCAAGGGTTGAAATTTTCAACGAGAGAAGCATCTCCGGTGAACATTACAGCTGCAGATGCAAGTGACAAAGGGATGGTAAAAGCTACTTTGAGTTTGGGTGCTGTTGGACTTCAGGATAAGAATGAATACATATTTTTCGCCTTAAACAAAGATTGTGACAAGCTAAGAGAGTGTACAAAGTAA 2379 0.4725 MERSRSKRNYYYDQDYDSETVARTRPRYNHHYSAGAGNHRHRGGGARHAKAQDSQLSVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRMPTFSPAQEALLLIHERILESDAAFGVAEEEEEYGGRGGGGGGRDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQALQCLFEDNIFYTAFSHDVDMRNREMYDFAWPFYRNVVGDVNAVKDAIANISSRLRESQHRDRSHFHGRVHSPERFFSPDNDYIPHVTSGSRRSSVDGATFGSRGSNTTSRNNSHSAMNYLMEPGAAPVADDVQGYYGEELVFRVLCPVERVDRIIGESGGIVEFLQNEVGVDVKVTDPVGGSDEQIVIITSEEGPDDELFPAQEALLHIQTRIVDLILDKDNTITTRLVVPSNEIECLDGKDATLSEIRRLTGANIQILPRDELPPCVAKTDELVQAEASCTQYREDPKPYLPIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPQVSLPGVEASSSNNLVPVTETLTTYQNMQTVAAALPLKETGGSSTEIGKQKESDRRDDVLSGLNRIAVPLVTRSTLEVVIPEYAVPKLIAKSKSKLSQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSKSLCHKKTALKLLKFRKLCLKHFVPCTDWISMCLQDCCGQGLKFSTREASPVNITAADASDKGMVKATLSLGAVGLQDKNEYIFFALNKDCDKLRECTK 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02112 792 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 353 419 IPR036612 GO:0003723
Vimu10g02112 792 ProSiteProfiles Type-1 KH domain profile. 361 428 - -
Vimu10g02112 792 Gene3D K Homology domain, type 1 621 693 IPR036612 GO:0003723
Vimu10g02112 792 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 280 IPR036612 GO:0003723
Vimu10g02112 792 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Vimu10g02112 792 ProSiteProfiles Type-1 KH domain profile. 622 686 - -
Vimu10g02112 792 CDD KH-I_PEPPER_rpt1_like 361 429 - -
Vimu10g02112 792 Gene3D K Homology domain, type 1 52 166 IPR036612 GO:0003723
Vimu10g02112 792 ProSiteProfiles Type-1 KH domain profile. 166 202 - -
Vimu10g02112 792 MobiDBLite consensus disorder prediction 34 53 - -
Vimu10g02112 792 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 53 309 - -
Vimu10g02112 792 Gene3D - 360 535 - -
Vimu10g02112 792 CDD KH-I_PEPPER_rpt2_like 169 277 - -
Vimu10g02112 792 CDD KH-I_PEPPER_rpt1_like 59 132 - -
Vimu10g02112 792 Pfam KH domain 169 219 IPR004088 GO:0003723
Vimu10g02112 792 Pfam KH domain 624 687 IPR004088 GO:0003723
Vimu10g02112 792 Pfam KH domain 62 110 IPR004088 GO:0003723
Vimu10g02112 792 Pfam KH domain 364 416 IPR004088 GO:0003723
Vimu10g02112 792 MobiDBLite consensus disorder prediction 309 335 - -
Vimu10g02112 792 SMART kh_6 621 691 IPR004087 GO:0003676
Vimu10g02112 792 SMART kh_6 444 539 IPR004087 GO:0003676
Vimu10g02112 792 SMART kh_6 165 221 IPR004087 GO:0003676
Vimu10g02112 792 SMART kh_6 360 433 IPR004087 GO:0003676
Vimu10g02112 792 SMART kh_6 58 139 IPR004087 GO:0003676
Vimu10g02112 792 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 438 542 IPR036612 GO:0003723
Vimu10g02112 792 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 614 692 IPR036612 GO:0003723
Vimu10g02112 792 Gene3D K Homology domain, type 1 167 281 IPR036612 GO:0003723
Vimu10g02112 792 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 56 110 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02112 Vimu-Chr10 31035070 31041020 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02112 K21444 - gmx:100804167 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02112 10 31035070 31041020 Vimu10g02112 10 31035070 31041020 ECH