Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02019 ATGGCCACTCTCTTTAGTTTTCACACCACCCTTCGCCCCTCTTCCTATCTTTCCTCATCACTCTCCTCACCTTATCTGCTGCTACCTCCACACCCCTTCTCCAACACCCTCTCCACAACTTTCTTCGGCCAAACTGTAAGCCTCAAATATGCTTCCACTTCCACAAGCAACAGTGCCTGTTCACTCTCTGCTCGCATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTGACTGATGCTGTGAAGGAGCATGTGGAAGATAAGGTGGGAAAGGCGGTTCAGAAGCATAGTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTACTAGAGGAGGAGGTGAATTTGGACGAGGACCCAGAACTCGTAGGTGTGAGGTGACTTTGTTCACTAAGAGGCATGGAGTGTTACGGGCTGAGGAGGACGCTGAAAGCACCTATGGAAGTATAGATTTGGTATCATCAATCATTCAGAGAAAGTTGAGGAAAATAAAGGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGTTTCAATAGGTTGAAGGTTAGGGAGCCGGTGGAACAATTACCTGTGGTAGAGGATAAAATATTATCCCCAGAGGATGAAGAAGAATCAATTGATGAGGTTGGTAGTTGGTACTTCACGGTTGTTCGCACAAAGTACTTTGACATGCCACCCTTGACTGTCTCTGAAGCAATAGAGCAACTTGTAAATGTTGATCATGACTTCTATGGTTTTAGAAACGAAGAAACTGGGGAAATTAATATTGTGTATAAAAGAAAGGAAGGTGGATATGGACTCATTATACCCAAAGGTAATGGTGAAGCAGAGAAATTGGAGCCTGTTGTGCTTGAACCAGCTGTAGAACCCTCCCTGAAAGAATGA 912 0.4518 MATLFSFHTTLRPSSYLSSSLSSPYLLLPPHPFSNTLSTTFFGQTVSLKYASTSTSNSACSLSARMSWDGPLSSVKLIIQGKNLELTDAVKEHVEDKVGKAVQKHSHLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVLRAEEDAESTYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVEQLPVVEDKILSPEDEEESIDEVGSWYFTVVRTKYFDMPPLTVSEAIEQLVNVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKGNGEAEKLEPVVLEPAVEPSLKE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02019 303 Coils Coil 298 303 - -
Vimu10g02019 303 FunFam Ribosome-binding factor PSRP1, chloroplastic 77 180 - -
Vimu10g02019 303 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 78 175 IPR003489 GO:0044238
Vimu10g02019 303 NCBIfam ribosome-associated translation inhibitor RaiA 76 180 IPR003489 GO:0044238
Vimu10g02019 303 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 76 182 IPR036567 -
Vimu10g02019 303 PANTHER 30S RIBOSOMAL PROTEIN 61 289 - -
Vimu10g02019 303 Gene3D - 235 284 IPR038416 -
Vimu10g02019 303 Hamap Ribosome hibernation promoting factor [hpf]. 75 280 IPR034694 -
Vimu10g02019 303 FunFam ribosome-binding factor PSRP1, chloroplastic 235 286 - -
Vimu10g02019 303 CDD RaiA 76 175 IPR003489 GO:0044238
Vimu10g02019 303 Gene3D - 76 187 IPR036567 -
Vimu10g02019 303 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 224 276 IPR032528 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02019 - - gmx:100803327 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02019 10 29592471 29594174 Vimu10g02019 10 29592471 29594174 ECH