Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02017 ATGTCTAAAATCACAATAACCTCTCCAAAACACTGTGCTGCCAAAGAAGGACTGAAAATTAAGAGCAACTACAAGAAGCTCTATTTCACTTTGTCAGCATTTTTTACCTCAATTCTACTGCTAATACTTCTTATTTGGCTGATCCTCCACCCTGCCAAGCCTCAATTCTCTCTCAAAGAAGTTGACATCTACCAGCTGAGTCTCTCAGGCCCCAACCTCAACTCCTCCATCCAACTCACCCTCTTCTCCAAGAACCCAAACCAGAAAGTTGGCATTTACTACGACGAGATTCAAGTCTATGCAACCTACAAGGGCCAGCAAATTACCGGTGACACGCCTGTGCCACCCTTCTACCAGGGCCAAGAGGAGAGTAATCTCATAACAGCCTCTTTGGTGGGAAACATTTTACCTGTGCCTCCCTCTCTTGGCTTTGAACTGGGTCGTGATCAAACTGTTGGAAGACTGGTTTTGAATCTCAAAGCCAATGGAAAGCTTCGTTGGAAGGTTGGAACTTGGGTTTCTGGGCGTTACAGGTTCAATGTTAATTGTGTTGCTATCAATGCCTTTGTACCTTCCATTCCTGCAGCTCCTCTCACTTCCAATCGAGGATCCCAGTGCTCTACCACACTTTAA 633 0.4534 MSKITITSPKHCAAKEGLKIKSNYKKLYFTLSAFFTSILLLILLIWLILHPAKPQFSLKEVDIYQLSLSGPNLNSSIQLTLFSKNPNQKVGIYYDEIQVYATYKGQQITGDTPVPPFYQGQEESNLITASLVGNILPVPPSLGFELGRDQTVGRLVLNLKANGKLRWKVGTWVSGRYRFNVNCVAINAFVPSIPAAPLTSNRGSQCSTTL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02017 210 PANTHER OS05G0367900 PROTEIN 24 197 IPR044839 GO:0098542
Vimu10g02017 210 Pfam Late embryogenesis abundant protein 83 183 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02017 Vimu-Chr10 29554315 29554947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02017 27 183 EF-hand Containing Proteins AT5G21130 27.811 1.37e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02017 - - gmx:100783857 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02017 10 29554315 29554947 Vimu10g02017 10 29554315 29554947 ECH