Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02014 CGCGAAAACTCCGTCGAGCCCCTCTCCCTCTTCAACAACAGCAAGACCAGCGAGTTCTGTGCGCCCCTCACCTCCTTCGACTGGAACGACATCGATCACAATCGAATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATTGAGCGCACCGTCGTCGAGACGCAGCTCATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGCGAGGCAAGAGTCTTCGCCTCCGTGTCCGCTGACGGCTCCGTACGAATCTTCGATTTGCGTGACAAAGAACACTCCACCATCATCTACGAAAGCCCCCACCCCGATACCCCTTTGCTTCGTTTGGCTTGGAATAAGCAGGATCTCAGGTACATGGCTACCATTTTGATGGATAGTAATAAAGTTGTGATATTGGATATTAGGTCCCCCACTACTCCTGTGGCGGAATTAGAGAGGCATCGTGGGAGTGTGAATGCCATTGCTTGGGCTCCTCATAGCTCCACGCATATTTGTTCTGCTGGGGATGATACTCAGGCTCTTATCTGGGAATTGCCCACGCTGGCTGCTCCCACTGGGATTGATCCCATGTGCATGTATTCTGCTGGCTGTGAAATCAACCAGCTTCAATGGTCCGCTGCTCAGCCTGATTGGATTGCTATTGCTTTCGCCAACAAGGTGCAGCTTTTGAAGGTTTGA 690 0.5333 RENSVEPLSLFNNSKTSEFCAPLTSFDWNDIDHNRIGTSSIDTTCTIWDIERTVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWELPTLAAPTGIDPMCMYSAGCEINQLQWSAAQPDWIAIAFANKVQLLKV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02014 229 ProSitePatterns Trp-Asp (WD) repeats signature. 36 50 IPR019775 -
Vimu10g02014 229 SMART WD40_4 4 49 IPR001680 GO:0005515
Vimu10g02014 229 SMART WD40_4 52 90 IPR001680 GO:0005515
Vimu10g02014 229 SMART WD40_4 141 181 IPR001680 GO:0005515
Vimu10g02014 229 FunFam Protein TRANSPARENT TESTA GLABRA 1 12 229 - -
Vimu10g02014 229 SUPERFAMILY WD40 repeat-like 18 225 IPR036322 GO:0005515
Vimu10g02014 229 PANTHER WD REPEAT CONTAINING PROTEIN 2 229 IPR045159 -
Vimu10g02014 229 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Vimu10g02014 229 Pfam WD domain, G-beta repeat 59 90 IPR001680 GO:0005515
Vimu10g02014 229 ProSitePatterns Trp-Asp (WD) repeats signature. 168 182 IPR019775 -
Vimu10g02014 229 Gene3D - 9 228 IPR015943 GO:0005515
Vimu10g02014 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 182 IPR001680 GO:0005515
Vimu10g02014 229 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 182 - -
Vimu10g02014 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 99 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02014 Vimu-Chr10 29544093 29547785 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02014 K11805 - gmx:100804923 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02014 10 29544093 29547785 Vimu10g02014 10 29544093 29547785 ECH