Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01969 ATGGAGTGTGGGCCGTGGGATCTTGAGATTGAGGAAATGAAAGGAAAGAAGGTGGTGAGCGTCTGCAATGGAAAGCCGTCGCTGTTAGGGTTTCGCCCACATTGCATTTCGGACGTCACGCTATACACACCCAGGTTCTCGATTGGATTCTACTTAGGGTTTTCAACATTTTTCTTTCCCTTCCATCGCGCATTCTCGAGATCTAGGGTTTATGCTTCGTTGTTGGAGTTTTATCTTATGGCACCTACTGTACCTATAGAGTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCATTCACAGAATATGGGGAAGTCTAGGAAATACTCCAAAGCTTATGCTACTGGTTTTGTTCCTGATTTTCGGCATGCTGTTGAGACTATGGGTGAATCGGAAGGGTTGGGCAGCTTGGGAAGGGTTGATACCGAGCTTACGGCATCAGCAGATTCTTGTGCACCAAAGAGGAAATGCCCTGGTTTGAGCACCGGTGGTTATGGTAGTTTTGATGTACCTTTTCAACTTTTCTCTTTGTCAAGGATGTCGGGTTTTGAGAGAAAGGATTTGAAAACAAGGTTGACATGGGAACTTGAACAAGTAAAGGAATTTCAGAAGAAAGTTGAAGCTATGAACTCAAATGCTCTAGTGTTATCACCCTCCAGTGACATTAGGAGCTGCAGTGCAGGGCAGAAGAGGCCTAAGCTGGAGAGCCAGCATTTGGCAATGGAAGTATCAGTGCCACATGGTAAGAAAAGGCCCTTACCAGGAAATAGTGGTCCCAGGACAAAGAAAAGTATATCTGGGCGTCCTGAACTTCCAAAACCTTCTGCGCCAGTGGCCTCACATGCTGCGATGATGAAACCGTGTGAGTCATTACTTAACCGATTGATGACTCATCAATTTGGTTGGGTTTTCAACACACCTGTTGATGTCGTTAAATTGAACATTCCGGATTATTTCACTGTCATCAAACATCCAATGGATTTGGGTACTGTGAAGAGGAGAATAACCTCTGGTGAATACACGAATCTCATGGATTTTGCTGCTGATGTGCGACTTACTTTCTCAAATGCAATGACATATAATCCACCTGGCAATGATGTACACCTCATGGCTGATACCCTTCATAAAATTTTTGAATCGAGATGGAAGGCGATAGAAAAAAAAATTCCTGTTATTGACTGTGTTCCATCTGAGCCTTCTAGACCTACGCGTGTGGAAACAGAAATCTCTGATCGAGTTCCTCCCTCAAAAAAGAAGAAAATAACATCAAATAATGTCAAGCCTGAGCCTCTTAAAATAATCATGACTGTAGAGGAGAAGCATAAATTGAGTGTAGAGTTGGAGGCCATGCTTGGGGAGCTGCCTGATGCTATTGTTGATTTTTTGAGAGAGCAAAGTTATAATGCAGGGCAAACCAATGATGATGAAATTGAAATCGATATTGATGCTCTTAGTGATGACACCCTGTTCAAACTGCGGAAGCTTCTGGATGATTATTTGCTCGAGAAGCAGAGATCTCAGGCAAAAGCTGGACAATGTGAAATGGAGCTTCTGAATGAATCAGGGTTCAGTAATTCACCGGTGCAGCCTTGCAAAGGCAATGAACAGGTGGAGGAGGATGTGGACATTGTTGGTGGAAATGATCCTCCTATTTCAACTTATCCTCCATTAGAGATTGACAAAGATGGTACCAATAGAAACAGTAAATGCAGTAGTTCAAGCAGTTCTAGTAGTGAATCTGGTGGCACTTCATCCAGTGATTCAGACTCGGGTAGTTCATCTGGAAGTGAATTGGATATGGCTAAAACATCAGAACCTCTTAGTGGTACCAAGGTAAATGGGATACTAATGGTTTCAGATGTCATGATCAAAACAAAGGGGATCCTGGTAATTCGGACACTGGAAAGGGTGGGTACCAATGTTGATGTCTGTAATGATGTCCATATTATGACTTCCCAGAGTAAGCTTCTTGCTTCTGAATCAGAAAGTCATCAAGAGGGGTATGATCTCACCGTTCATGCTTGGGACATTTTAGGGGAGAGTGCTGCATCTAAGAGGCAAGTTTCTCCCGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGTTTTGCTGACACCATTCTTAAAGCTCAAGAGAAAGCCCTTGAAAAGAGCATATCTGTGGCTGCTAAGGCACCATTAAATCTAGTAATTACCAATTTACCAACATTGTTGTCTTTCATGAAAGCTGTGCCAGCATTTCTTAAAGATGAAAAGCGGGATCCTGAAAAACTTAGGTTGGAGCGAGAAGAACTTGAAAGGCGGCAGAAAGAAGAGAAAGCACGGTTACAGGCAGAGGCAAAGGCTGCAGAAGAAGCTAGGAGGAAGGCAGAAGCAGAAGCTGCAGCTGAAGCCAAAAGGAAAAGGGAACTGGAAAGAGAAGCAGCCCGTCAAGCTTTGCAAAAGATGGAGAAAACAGTCGATATAAACGAGAGCAGTCAATTTTTGGAAGATCTTGAGATGCTGAGTGCTGTACATGACGAACCTATGCCAAGTTTCAAAGAGGAAACAAGCACGGATCTACCTCAAAATGGATTGGGTAGGATCAAACTACAGGGGAATCCCTTAGAACAACTAGGTTTGTATATGAAGGATGAGGAGGAGGAAGAAGAGGAGGAACTGCCTCTGAGTGGTGCTGCAGGACCATCAAATGATGTGGAAGAAGGAGAAATTGACTGA 2718 0.4349 MECGPWDLEIEEMKGKKVVSVCNGKPSLLGFRPHCISDVTLYTPRFSIGFYLGFSTFFFPFHRAFSRSRVYASLLEFYLMAPTVPIEFAGQKESRKYSHSQNMGKSRKYSKAYATGFVPDFRHAVETMGESEGLGSLGRVDTELTASADSCAPKRKCPGLSTGGYGSFDVPFQLFSLSRMSGFERKDLKTRLTWELEQVKEFQKKVEAMNSNALVLSPSSDIRSCSAGQKRPKLESQHLAMEVSVPHGKKRPLPGNSGPRTKKSISGRPELPKPSAPVASHAAMMKPCESLLNRLMTHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKRRITSGEYTNLMDFAADVRLTFSNAMTYNPPGNDVHLMADTLHKIFESRWKAIEKKIPVIDCVPSEPSRPTRVETEISDRVPPSKKKKITSNNVKPEPLKIIMTVEEKHKLSVELEAMLGELPDAIVDFLREQSYNAGQTNDDEIEIDIDALSDDTLFKLRKLLDDYLLEKQRSQAKAGQCEMELLNESGFSNSPVQPCKGNEQVEEDVDIVGGNDPPISTYPPLEIDKDGTNRNSKCSSSSSSSSESGGTSSSDSDSGSSSGSELDMAKTSEPLSGTKVNGILMVSDVMIKTKGILVIRTLERVGTNVDVCNDVHIMTSQSKLLASESESHQEGYDLTVHAWDILGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKSISVAAKAPLNLVITNLPTLLSFMKAVPAFLKDEKRDPEKLRLEREELERRQKEEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQKMEKTVDINESSQFLEDLEMLSAVHDEPMPSFKEETSTDLPQNGLGRIKLQGNPLEQLGLYMKDEEEEEEEELPLSGAAGPSNDVEEGEID 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01969 905 ProSiteProfiles Bromodomain profile. 296 368 IPR001487 GO:0005515
Vimu10g01969 905 CDD Bromo_plant1 284 382 IPR037377 -
Vimu10g01969 905 Coils Coil 748 819 - -
Vimu10g01969 905 MobiDBLite consensus disorder prediction 843 905 - -
Vimu10g01969 905 PRINTS Bromodomain signature 331 349 IPR001487 GO:0005515
Vimu10g01969 905 PRINTS Bromodomain signature 349 368 IPR001487 GO:0005515
Vimu10g01969 905 PRINTS Bromodomain signature 299 312 IPR001487 GO:0005515
Vimu10g01969 905 PRINTS Bromodomain signature 315 331 IPR001487 GO:0005515
Vimu10g01969 905 PANTHER TRANSCRIPTION FACTOR GTE8 264 888 - -
Vimu10g01969 905 SMART bromo_6 277 387 IPR001487 GO:0005515
Vimu10g01969 905 MobiDBLite consensus disorder prediction 566 606 - -
Vimu10g01969 905 MobiDBLite consensus disorder prediction 404 423 - -
Vimu10g01969 905 MobiDBLite consensus disorder prediction 764 803 - -
Vimu10g01969 905 MobiDBLite consensus disorder prediction 400 423 - -
Vimu10g01969 905 MobiDBLite consensus disorder prediction 541 606 - -
Vimu10g01969 905 Pfam Bromodomain extra-terminal - transcription regulation 435 497 IPR027353 -
Vimu10g01969 905 ProSiteProfiles NET domain profile. 425 507 IPR027353 -
Vimu10g01969 905 Gene3D - 273 392 IPR036427 GO:0005515
Vimu10g01969 905 Gene3D - 429 507 IPR038336 -
Vimu10g01969 905 SUPERFAMILY Bromodomain 259 391 IPR036427 GO:0005515
Vimu10g01969 905 Pfam Bromodomain 288 371 IPR001487 GO:0005515
Vimu10g01969 905 MobiDBLite consensus disorder prediction 243 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01969 Vimu-Chr10 28711223 28715639 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01969 - - gmx:100776368 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01969 10 28711223 28715639 Vimu10g01969 10 28711223 28715639 ECH