Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01966 ATGGTGCAGGTGCTCTTCGCCAAAGTTAGGCGCAAAGTTGTTGCTGCTGAGTTAATATGTAAACTTGTCCTCTTGATCCTAGAGCTTGGCAAGATTGTCCAAGGCTTGGAAAATATGTCTTGGAGCTTTATTAGTTATGGGTATGCAAATAGTCACTACATTTTTCTCCACTTTTTCTTTTATTTTCTCTTCTCTTCGTTTTCTACTCTTCTCACTTTTTTCTTCTTTGTTTCATTTTTTATTCCAATGAATTTCATGGATCAGGCAAGGTCAAGATCGGAATCAACGGTACACCATCTTCATCCTCTGTTCTCCCTTCTCCTCCTTCAGATCAGTTCAAAACTTTTTCAACTGTTTCATTTTCCTTTTTCTTTATTATATTTATTTATTTTAAATATAACAGGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTCGCTCTTCAGAGAGACGATGTGGAACTCGTTGCTGTTAACGATCCCTTCATCACCACTGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGATGTCACCGTGAAGGACTCCAATACCCTTCTCTTTGGTGAGAAGCCAGTCACTGTTTTTGGACACAGGAATCCTGAAGAGATCCCATGGGGTTCGACCGGAGCTGATATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCCGCCGCTCATTTGAAGGGTGGTGCTAAGAAGGTTATTATTTCTGCCCCCAGCAAGGATGCTCCCATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGATATCATTTCCAATGCCAGTTGCACAACCAACTGCCTTGCTCCTCTCGCCAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACAGTTCATTCCATCACCGCTACCCAGAAGACTGTTGATGGACCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGGAAAGTCCTTCCTTCTTTGAATGGAAAATTGACTGGAATGGCATTCCGTGTTCCCACCGTGGATGTCTCCGTTGTTGACCTCACTGTGAGGCTGGAGAAGAGTGCCAGCTATGATGAAATTAAAGATGCTATCAAGGAGGAATCCGAGGGCAAGTTGAAGGGAATTCTTGGTTACACCGAAGATGATGTGGTCTCCACCGACTTTGTGGGTGACAGCAGATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAACAAAAATTTTGTGAAGCTCGTCTCGTGGTACGACAATGAGTGGGGATACAGCTCACGTGTGATTGACCTGCTTGTTCACGTTGCCAAGATCTCTCTTTAA 1392 0.4389 MVQVLFAKVRRKVVAAELICKLVLLILELGKIVQGLENMSWSFISYGYANSHYIFLHFFFYFLFSSFSTLLTFFFFVSFFIPMNFMDQARSRSESTVHHLHPLFSLLLLQISSKLFQLFHFPFSLLYLFILNITGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHDVTVKDSNTLLFGEKPVTVFGHRNPEEIPWGSTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLEKSASYDEIKDAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNKNFVKLVSWYDNEWGYSSRVIDLLVHVAKISL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01966 463 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 278 441 - -
Vimu10g01966 463 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 284 441 IPR020829 GO:0016620
Vimu10g01966 463 FunFam Glyceraldehyde-3-phosphate dehydrogenase 278 443 - -
Vimu10g01966 463 SMART gp_dh_n_7 131 279 IPR020828 GO:0051287
Vimu10g01966 463 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 277 284 IPR020830 GO:0016620
Vimu10g01966 463 FunFam Glyceraldehyde-3-phosphate dehydrogenase 130 288 - -
Vimu10g01966 463 Gene3D Dihydrodipicolinate Reductase; domain 2 278 443 - -
Vimu10g01966 463 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 131 232 IPR020828 GO:0051287
Vimu10g01966 463 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 132 453 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vimu10g01966 463 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 132 460 IPR020831 GO:0016620
Vimu10g01966 463 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 397 412 IPR020831 GO:0016620
Vimu10g01966 463 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 273 291 IPR020831 GO:0016620
Vimu10g01966 463 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 374 IPR020831 GO:0016620
Vimu10g01966 463 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 238 251 IPR020831 GO:0016620
Vimu10g01966 463 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 300 316 IPR020831 GO:0016620
Vimu10g01966 463 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 295 IPR036291 -
Vimu10g01966 463 Gene3D - 132 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01966 Vimu-Chr10 28590927 28596155 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01966 K00134 - gmx:100037457 633.639