Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01950 ATGCTATGCTGTGTATGTGGTTCCTTTCTTTTTCTAGTAGAGTACAGTAGAAGTTCCTCTCTTCTACCCCTCCTGCACGCAAGGTCGCTAACTTCAATGGTTATGGCTATGGTACCTCCCTGCTATTCTGCGCTAATGTTTTCGAAATCAGAGTTGATGGTTCTTCTGGATTTTCAGGTCAACGCAGAGAATTTAGACGTCGAAATAGAGCAATTGCTGAATGCCGAGAAGCATGCGAGGCTCGCCGGCGATGTCGCCGCCACAAGAAACGCCGTCACTGAAATTTTACGACTATGTTTCGAAGCGCGTGCATGGAACACTCTCAATGACCAAATTGTTCTGTTATCCAAACGACGTGGCCAGATTAAGCAGGCTATAACAGCGATGGTCCAGCAAGCTATGCAATATATTGATGAGACACCGCATATTGAAATTCGTATAAAACTCATCGAAACCTTGGAAAGTGTATGTAACGGAAAGATATATGTTGAGATTGAGAGAGCTCGATTGATCAAGAATCTTGCAAAAATTAAGGAAGAACAAGGACTTATTGTTGAAGCTGCTGATTTGATGCAAAAAGTTGCGGTAGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATAGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCTCAGATTCTCTCAAGAAAGATTAGTACAAGAGTATTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGGCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCAGATATACCATCTCTGCCAGAGTTGAAGAGGATCTATTATGAACTAATGATTCGGTACTATTCCCATAAAAAGGATTACCTTGAAATTTGTCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATACTACCGAGTGGATTCCAATCCTGAGGAAGATATGCTGGTTCTTGGTTCTATCACCACATGATCCAATGCAGTCAAGCCTTCTCAATTGCATCTTGGAGGATAGGAATCTGTCTGAGATTCCAAACTTTAAGTTGCTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAAGATGAGTTTGAGAATGAGAATATCCTTGGAGAGAATTTGGGTGCAGAACCAGAAGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTCTTGTTATATCAGAATACTATGCGAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTGTCCAGGAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCCAAGGCATTGGTGGCAAAAATTGATAGACCCATGGGAATAGTGTTTTTCCAAAGAGCCAAGGATAGCAACGATGTTCTTAACTCATGGGCAGCAAACTTGGAGAGCCTGCTTGATCTTGTGGAGAAGAGCTGCCACCAAATACATAAGGAAACAATGGTGCATAAGGCTGCCTTGAAGGTTTAA 1500 0.412 MLCCVCGSFLFLVEYSRSSSLLPLLHARSLTSMVMAMVPPCYSALMFSKSELMVLLDFQVNAENLDVEIEQLLNAEKHARLAGDVAATRNAVTEILRLCFEARAWNTLNDQIVLLSKRRGQIKQAITAMVQQAMQYIDETPHIEIRIKLIETLESVCNGKIYVEIERARLIKNLAKIKEEQGLIVEAADLMQKVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKAKEGDNVVEEAPADIPSLPELKRIYYELMIRYYSHKKDYLEICRCYKAIYEIPSVKENTTEWIPILRKICWFLVLSPHDPMQSSLLNCILEDRNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENENILGENLGAEPEEDLRERVIEHNILVISEYYARITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPMGIVFFQRAKDSNDVLNSWAANLESLLDLVEKSCHQIHKETMVHKAALKV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01950 499 Gene3D - 386 464 IPR036388 -
Vimu10g01950 499 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 389 475 IPR000717 -
Vimu10g01950 499 Pfam PCI domain 348 456 IPR000717 -
Vimu10g01950 499 SUPERFAMILY "Winged helix" DNA-binding domain 389 465 IPR036390 -
Vimu10g01950 499 Coils Coil 55 75 - -
Vimu10g01950 499 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 462 494 IPR040896 -
Vimu10g01950 499 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 59 493 IPR040134 -
Vimu10g01950 499 ProSiteProfiles PCI domain profile. 287 460 IPR000717 -
Vimu10g01950 499 FunFam 26S proteasome non-ATPase regulatory subunit 12 385 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01950 Vimu-Chr10 28368241 28375705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01950 K03035 - gmx:100793755 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01950 10 28368241 28375705 Vimu10g01950 10 28368241 28375705 ECH