Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01934 ATGGCTTCAACTTCAGTCACCACTTTCTCCATCTGCTCCGAATCCCAATCAAAGTTCCGCAATTTTCTAGGCCACCCGCTGATTCCTAACCGCAACAAACCTACATCAATTTCGGTTCCACCAGCCATGGTTCGCGCCACCCTTTTCTCGACATTCACTTCCTCCCAAACCCCTTGCGCACCCTACTCGAATTTTTCACCGGGAAGAGCTTTATTCAAGTTCCTCTCAGAAAAGGTGGCAATTTTCCTCATTGGGTCGTTTCTGGTGTCGGGTGCCTTCAGTAAGAGAGCTGCTTTCGCAGAAGCATCGCCTTCTGTGAGTTCTGATGTTGTGTTGGAGGAGAAGATGAAGCCCGCAGAAGAGAAAAATGAGGAAGAGGAAAGCGAGGAGGAAATGTGGGAGAAGGTTTTGGAGAAGGATCCAAAAAATGTCGAGGCTCTCAAGGTGGTTTTGTATGGAAAAATTAAGAGAGGGAAGTCAAAAGAGGCTGTGAAGTTTGTGGAGGATTTAATTGCTGCGGAGCCGAAAGAGGTTGAGTGGAGGCTTTTGCTTGCACTTTGTTATGAGACAATGGGGCAATTGAGTAAAGCTAAAAGATTGTTCAGGGAAATCTTGAAGAGAAGGCCTCTTCTACTCAGAGCTTTGCATGGTTTGGCTATGGTGATGCATAAAAACCATGAAGGTCCAGCTATATTTGAAATGCTAAATAAGGCTCAAGGGTTAGCTTCTCGTGAAAACAGAGTTACTGAGGAGAGAAACATAAGAATCTTAATTGCACAAATGCATGCTGTACAGGGTAATCTGGAGGAGGGCATTAAGAAATTGCAAGAATTGATTGACCAAAATCCTCGAGATTTTAGGCCTTATATTTGTCAGGGAATAATATACAGTCTCTTGGGTAAAACTGAAGAAGCTGCACAGCAGTTTGAAACATATCAAAGTCTTGTGCCTGAAGAATTTCCTCAGAGGGGATTTCTGGATGATGTTGCCATAGCAGCAAAAAAAACATCCTTTGAAAAGTTTAATAGAGAATTTAGAAATCAATTTTCTTATCGGAAATAG 1062 0.4284 MASTSVTTFSICSESQSKFRNFLGHPLIPNRNKPTSISVPPAMVRATLFSTFTSSQTPCAPYSNFSPGRALFKFLSEKVAIFLIGSFLVSGAFSKRAAFAEASPSVSSDVVLEEKMKPAEEKNEEEESEEEMWEKVLEKDPKNVEALKVVLYGKIKRGKSKEAVKFVEDLIAAEPKEVEWRLLLALCYETMGQLSKAKRLFREILKRRPLLLRALHGLAMVMHKNHEGPAIFEMLNKAQGLASRENRVTEERNIRILIAQMHAVQGNLEEGIKKLQELIDQNPRDFRPYICQGIIYSLLGKTEEAAQQFETYQSLVPEEFPQRGFLDDVAIAAKKTSFEKFNREFRNQFSYRK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01934 353 Gene3D Tetratricopeptide repeat domain 102 331 IPR011990 GO:0005515
Vimu10g01934 353 Pfam Tetratricopeptide repeat 262 315 - -
Vimu10g01934 353 Pfam Tetratricopeptide repeat 155 210 - -
Vimu10g01934 353 SUPERFAMILY TPR-like 130 318 IPR011990 GO:0005515
Vimu10g01934 353 SMART tpr_5 286 319 IPR019734 GO:0005515
Vimu10g01934 353 SMART tpr_5 178 211 IPR019734 GO:0005515
Vimu10g01934 353 SMART tpr_5 252 285 IPR019734 GO:0005515
Vimu10g01934 353 PANTHER TPR REPEAT-CONTAINING PROTEIN PA4667 126 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01934 Vimu-Chr10 27861389 27865525 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01934 - - gmx:100795327 544.273