Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01926 ATGGACTTGGTCGCCAAGCTTCACCACTTAGACCTCACCGGCGCGGTCATCTTGGATGCACGAAAGCCCTCCGTGCTACGCCACCTTCCGCCACGCCTCACCACCAGACCGAATACCAACAACACTAACATCACCACCAATCTAATTTACACCTACCGCTTCTCGAGCCCATTGCGGCCCAATTCTGCTTCCTCTTCGGGCCTCACAACTGTAACAGTCGACGAAGACATCGAGTCTCTCTTCTCCGAAACCTCCTCGGAGGAGCCGCGGCGCAGAGGGAAGCAGCAGAGTAGCGGCGCGTCGGGCGTGTCGTCGGGGGTGAAGCTGGAAAACGTGGGGAAGGCGTATAAGGGCGTGACAGTGTTGAAGGACGTGAGTTGGGAGGTGAAGAAGGGGGAGAAGGTGGGTTTGGTTGGCGTGAACGGAGCGGGGAAGACGACGCAGATGAGGATTATCGCGGGATTGGAGGAGCCGGATTATGGGAACGTCGTAAAGGCTAAGCCGAACATGAAAATCGCGTTTCTGAATCAGGAGTTCGAGGTGTCGCTGAGCAGGACAGTGAGGGAGGAGTTCATGAGCGCGTTCAAGGAGGAAATGGAGGTGGCGGGGAAATTGGAGAGGGTCCAGAAGGCGCTCGAGGGTGCTGTCAACGATTTGGAGTTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGCGGAGGGCTCAGTCTGTGGACCTCGATGAGGTTGACGCGAAAATAAATAAGTTGGTACCTGAACTTGGCTTTTCTCCTGAGGATTCTGATAGGTTGGAGCCTGATTTATTGCTGTTAGATGAGCCCACAAATCACCTTGATCTTGATACCATTGAGTGGCTTGAGGAGTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGACCGAGCTTTCCTTGATCAACTGTGTACAAAAATTGTAGAAACTGACATGGGTGTGTCCAGGACGTTTGAGGGAAATTATTCGCAGTATGTAATTTCAAAAGCAGCATGGATTGAAGCACAGTATGCTGCTTGGGAGAAGCAGCAGAAAGAAATTGAGCACACAAGAGACTTGATAGGTAGATTAAGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGGGAAGAAGCTGGAGAGACTCCAGGAAGAGGAACTGGTGGAGAAGCCATTTGAACGCAAACAGATGAAAATCAGGTTCCCTGAGCGCGGAAAGAGTGGAAGATCTGTTGTAACAATTAGGAACTTGGAATTTGGTTTTGAAGATAAGCCACTTTTCAAAAAGGCAAATCTTACAATTGAAAGAGGAGAAAAAATTGCTATTATTGGTCCAAATGGATGTGGCAAGAGTTCTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTTGGGGAGCATAATGTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTAGACAAGACAGTGCTTGAGACAGTAGAGGAAGCAGCAGAGGACTGGAGGATTGACGATATAAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCTCGGCTGGCTTTTTGCAAGTTCATGGTTAAACCATCAACTCTGCTTGTTTTGGATGAACCCACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAGTGAATACGAGGGCACTGTTATCACAGTATCTCATGACAGATACTTCATAAAGCAAATAGTTAACAGGGTCATAGAAATTAAAGATGGCACTATACAGGATTATGCAGGTGATTACGATTATTATTTAGAGAAGAATCTCGATGCTAGGGAAAGAGAACTTGAACGCGAGGCAGAGGTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCCAAGATGTCGAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCGTTTCAGGCTGCAAAACAGAAGTCTAAAGGTGTGAAAAATTCGAAGAGATGGAATTGA 2046 0.4702 MDLVAKLHHLDLTGAVILDARKPSVLRHLPPRLTTRPNTNNTNITTNLIYTYRFSSPLRPNSASSSGLTTVTVDEDIESLFSETSSEEPRRRGKQQSSGASGVSSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDYGNVVKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVAGKLERVQKALEGAVNDLELMGRLLDEFDLLQRRAQSVDLDEVDAKINKLVPELGFSPEDSDRLEPDLLLLDEPTNHLDLDTIEWLEEYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHTRDLIGRLSAGANSGRASSAGKKLERLQEEELVEKPFERKQMKIRFPERGKSGRSVVTIRNLEFGFEDKPLFKKANLTIERGEKIAIIGPNGCGKSSLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYEGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYDYYLEKNLDARERELEREAEVDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNSKRWN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01926 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 620 IPR027417 -
Vimu10g01926 681 Gene3D - 265 369 IPR027417 -
Vimu10g01926 681 Gene3D - 104 264 IPR027417 -
Vimu10g01926 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 322 IPR027417 -
Vimu10g01926 681 MobiDBLite consensus disorder prediction 631 681 - -
Vimu10g01926 681 CDD ABCF_EF-3 414 606 - -
Vimu10g01926 681 SMART AAA_5 131 326 IPR003593 GO:0016887
Vimu10g01926 681 SMART AAA_5 438 606 IPR003593 GO:0016887
Vimu10g01926 681 Pfam ABC transporter 316 403 IPR032781 -
Vimu10g01926 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 414 629 IPR003439 GO:0005524
Vimu10g01926 681 Pfam ABC transporter 430 561 IPR003439 GO:0005524
Vimu10g01926 681 FunFam ABC transporter ATP-binding protein 374 644 - -
Vimu10g01926 681 Coils Coil 641 670 - -
Vimu10g01926 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 345 IPR003439 GO:0005524
Vimu10g01926 681 Gene3D - 377 642 IPR027417 -
Vimu10g01926 681 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 266 672 - -
Vimu10g01926 681 Pfam ABC transporter 122 207 IPR003439 GO:0005524
Vimu10g01926 681 MobiDBLite consensus disorder prediction 81 105 - -
Vimu10g01926 681 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Vimu10g01926 681 MobiDBLite consensus disorder prediction 631 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01926 Vimu-Chr10 27755042 27760055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01926 411 631 Calmodulin-binding Proteins AT2G36910 25.911 8.32e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01926 - - vum:124829475 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01926 10 27755042 27760055 Vimu10g01926 10 27755042 27760055 ECH