Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01923 ATGGCGACGGTGATGCAGAAAATCAAAGATATCGAAGATGAGATGGCAAGGACCCAAAAAAATAAGGCAACTGCTCATCATTTGGGCTTGCTCAAGGCTAAACTTGCAAAGCTGCGGAGGGAGCTCCTCACCCCTTCATCAAAAGGAGGTGGCGGTGCTGGTGAAGGTTTTGATGTCACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGAAAATCTACTTTGCTTAATAAGTTGACTGGGACATTTTCTGAGTTGTTGGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTAGATGCAATAAAGCCAATAACTCATAAGCGTCTTATAGAAAAAGAGCTGGAGGGATTTGGTATAAGGTTGAACAAAGAGCCACCAAATCTGACTTTTAGGAAGAAAGATAAAGGTGGACTTAATCTCACCTCAACTGCCACCACAACACATCTAGATCTTGAAACTGTGAAGGCTATATGTAGTGAGTACAGAATTCACAATGCTGATATTACTCTTCGGTATGATGCCACTGCTGATGACCTTATAGATGTCATTGAGGGTAGTAGAGTATATATTCCTTGTATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGTGCCCACCTGGAGTGGAACCTGGATGGTCTTCTGGACAAAATCTGGGAATATCTCAGCTTAACCCGTATCTATACTAAACCTAAAGGGATGAATCCGGACTATGAAGACCCTGTAATATTATCCTCAAAGAAGAGGACAGTTGAGGACTTCTGCAATCTGGTGGCACCATCTACTGTTGTCGATGATGTCATAGTATACTGTCGTCATCTATTGTTGTCACTACTGGAGTTCCAATTTCAACCGACGATCACACGATTTTCATTGTCTCGTCCAGGTGACCACCGTGTCGTCAACGACGCCTTCATTCGAGCTCTTACGCGTTTGCAGCGTCTTTTGAAGTTGTGGATTTGCTCTCTTTTTCTGTCGTCCATATGGCACATCTCGTCTCCTCTTAGGCAACGATTTAGAGCGTTGGGGTCACTCTTTTTCCTTTTTCAGGTTCTTCGTGCGTTGTTGCAAGTCACGTCTCCTCTTAGGTAG 1221 0.4365 MATVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTPSSKGGGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSELLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGLNLTSTATTTHLDLETVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYIPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLDKIWEYLSLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCNLVAPSTVVDDVIVYCRHLLLSLLEFQFQPTITRFSLSRPGDHRVVNDAFIRALTRLQRLLKLWICSLFLSSIWHISSPLRQRFRALGSLFFLFQVLRALLQVTSPLR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01923 406 Coils Coil 1 21 - -
Vimu10g01923 406 CDD DRG 65 273 IPR045001 GO:0003924|GO:0005525
Vimu10g01923 406 Pfam C-terminal region of MMR_HSR1 domain 162 267 IPR031662 -
Vimu10g01923 406 Pfam 50S ribosome-binding GTPase 66 87 IPR006073 GO:0005525
Vimu10g01923 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 281 IPR027417 -
Vimu10g01923 406 ProSitePatterns GTP1/OBG family signature. 93 106 IPR006074 GO:0005525
Vimu10g01923 406 Gene3D - 259 309 IPR012675 -
Vimu10g01923 406 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 90 266 IPR031167 GO:0005525
Vimu10g01923 406 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 91 301 IPR045001 GO:0003924|GO:0005525
Vimu10g01923 406 Gene3D - 105 215 - -
Vimu10g01923 406 Gene3D - 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01923 Vimu-Chr10 27681953 27689803 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01923 K06944 - gmx:100796064 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01923 10 27681953 27689803 Vimu10g01923 10 27681953 27689803 ECH