Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01915 ATGTGGAAACCCTCTTCTTCAGAAGGAGAAGCAGAGGCACCAAAGGCACCACCCAACAACCTGATCCCGTCCCTTCCAGACGACGTCGCTTTGAACTGCATAGCACGCATCCCTCGCTGCCACCACCCAATCCTATCCCTCGTTTCCAAACCCTTCCGCACCCTCCTCTCTACCCCTCTCTTCTTCACCACGCGCTGCCTCCTCAACTGCACGCAACCCCTCCTCTACCTCACTCTCCGCACGCCAGCCTCCACCCTCCAGTGGTTCACGCTCCAACGCACACTCCCTAGCCCCCTTTTAGCTTCCCTCCCCCCCATTCCCTCCCCCGCAGTGGGCTCCGCCTACGTCGTCCTTGGCTCCGCCATCTACGTCCTCGGCGGCTCCATCAACGATGTCCCCTCCCCCCACGTCTGGATCCTCGACTGCCGCTTCCACCGCTGGCTTCCGGGTCCAAGCATGCGTGTCGCTCGGGAGTTCGCCGCCGCGGGGGTCCTCGGTGGAAAGATTTACGTCCTCGGTGGCTGCATCGCTGACACGTGGACCCGCTCCGCCAACTGGGCGGAGGTCCTGGACCCCGACGTTGGGCGCTGGGAGAGGGTGGCCAGCCCCTCCGAGGTCCGGGAGAAGTGGATGCACGCCAGCGCGGTCCTCGGCGACAAGGTGTACGCGATGGCGGACCGCGGCGGCATCGCGTACGAGCCGCGCAGCGGATCGTGGGAGAGCGTAGGGGGAGAATTGGATCTCGGGTGGAGAGGTAGGGCGTGCGTGGTGGAGGGTATTTTGTACTGCTACGACTATTTGGGGAAAATCAAAGGGTTCGATGTGGGGCGCGGGGTGTGGGAAGAGTTGAAGGGGTTGGAGAAGGACTTTCCTAGGTTTCTTTGTGGGGCCACCATGGCTGATTTGGGTGGGAAATTGTGTGTGGTATGGGAGTGCCGTGAGAAAGGGAAAGAAATGGAGATTTGGTGCGCTGAGATTGGAGTGCAGAAGAATCCGGATGGAAAACTGTGGGGTCAACTTGGTTGGTTTGGGAAAGTTCTCTCTGTTTCTAAAGGCTCCTCTGTTGTGCATTGTTCTTCTGTTTCCTTGTGA 1092 0.6016 MWKPSSSEGEAEAPKAPPNNLIPSLPDDVALNCIARIPRCHHPILSLVSKPFRTLLSTPLFFTTRCLLNCTQPLLYLTLRTPASTLQWFTLQRTLPSPLLASLPPIPSPAVGSAYVVLGSAIYVLGGSINDVPSPHVWILDCRFHRWLPGPSMRVAREFAAAGVLGGKIYVLGGCIADTWTRSANWAEVLDPDVGRWERVASPSEVREKWMHASAVLGDKVYAMADRGGIAYEPRSGSWESVGGELDLGWRGRACVVEGILYCYDYLGKIKGFDVGRGVWEELKGLEKDFPRFLCGATMADLGGKLCVVWECREKGKEMEIWCAEIGVQKNPDGKLWGQLGWFGKVLSVSKGSSVVHCSSVSL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01915 363 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g01915 363 CDD F-box_AtAFR-like 21 65 - -
Vimu10g01915 363 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 8 347 - -
Vimu10g01915 363 SUPERFAMILY Kelch motif 100 330 IPR015915 GO:0005515
Vimu10g01915 363 Gene3D - 78 340 IPR015915 GO:0005515
Vimu10g01915 363 SMART kelc_smart 168 218 IPR006652 GO:0005515
Vimu10g01915 363 SMART kelc_smart 121 167 IPR006652 GO:0005515
Vimu10g01915 363 Pfam Kelch motif 157 203 IPR006652 GO:0005515
Vimu10g01915 363 Pfam Kelch motif 110 154 IPR006652 GO:0005515
Vimu10g01915 363 SUPERFAMILY F-box domain 15 87 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01915 Vimu-Chr10 27563492 27565824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01915 12 347 Miscellaneous Gene Families AT4G33900 36.915 7.05e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01915 - - gmx:100798508 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01915 10 27563492 27565824 Vimu10g01915 10 27563492 27565824 ECH