Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01859 ATGAATTCCTTTCGCGGATCACAAAACCGAAACAAACACGCTCCAATCCCGCGTCAACCCCGTTCCACCACCGACGAAAAACCCATGAATCCGCCTGCAGGGCCGCCCGCATTGCGCTTCCGCTCCCTCTCAACCTGCAGCCATAACCGCCCCTCCCCTTCCCGCGTAGTGCAGCGCTCCGCCTCCGCGCGCATCACCCGACAGCACACCACCACACGCGGCGAGGTAATGCTCAGCGACGTCGTCGGGAACGGCATCTCCGGCATCCTTCACAAGTGGGTGAACTACGGGCGCGGGTGGCGCCCCCGCTGGTTCGTCCTCCACGACGGCGTGCTCTCCTACTACAAGATCCACGGCCCCGACAAGTTAGTCCTCAACCAAGACGTCGAGGACGGTTCCATGGTCATCGGCGAGGAGTCCCTCCGCCGCATCAATAGCCACCGCCACTGCCCCTCCCGCAATCGCAAACCCGTCAGCGAAATCCATCTCATGGTGTGTTCTGTGCGAGAGAACAGTTCAGATAAGAGGAGGTTTTCTGTGTGTACGGGGACGAAGAAGAGACTGCATTTGAGGGCAGAGAGCAAGGAAGACAGAGCAATGTGGGTGGATGCAATGATGGCAGTGAAGGACATGTATCCTCGGTTGCCCAATGCGGAGGTTTTGTCACCCGTGGCATCAGTGGCTATTTCCACTGAAAAATTGAGAGAGAGGCTTTTAGAAGAGGGTGTGAGTGAAGCTACAATCGGGGAATGTGAGGAAATCATGAAATCCGAGTTCTCTCAGTTGAAGAAGCAAATGGTGGCTCTCAAGCACAAGCATTTGCTACTAATAGACACGTTACGCCAGTTAGAGTCAGAGAAAGTTGATTTGGAGAACACACTTATCGAAGACCAAAGGCAATCAAAGGATGGTGCAGATACTCATCCATTAACGCAAGAAAAATATAGCGAGGGAAGTGGGGAAGATTCTTCTGATGAGAACGATAGGCTGGATCCTTCAGACGACGACGACGATGCATTCTTTGATACATGTGAAATTCTATCAACAGGCTCAGATCACCTGAGATCCTGCCATGATTCTGAGCAGGATGAGAGTGGTCCAAATGAGATATGTGATGAAAAGTCACCCATTGGATCTGTTGGATTTAACTATCCTCATATCAAGCGACGAAAGAAGTTGCCCGATCCTGTTGAGAAAGAAAGTAGCATCAGTCTATGGTCAATCATAAAAGATAATATCGGGAAGGATCTTACAAAAGTTTGTCTTCCAGTTTACTTTAACGAGCCTCTCTCCTCACTGCAGAAATGTTTTGAAGATGTTGAGTACTCTTACCTTCTAGACCAAGCATATGAATGGGGTAAAATGGGTGATGGTTTGAAGAGGATGATACATGTAGCTGGATTTGCAGCTTCGGCATATGCTAGCACCAAAGGTAGAAGTTGCAAACCATTTAATCCACTGTTGGGAGAGACATATGAAGCAGATTACCCAGACAAAGGCATTCGCTTTATCTCTGAGAAGGTCAGTCATCACCCCATGATTGTAGCATGCCATTGTGAGGGCAGGGGCTGGAAATTTTGGGGTGACGTCAATTTAAAAAGTAAATTTTGGGGTCGTTCAATCCAGCTTGATCCTATTGGTGTATTGACAGTAGAGTTTGATGATGGAGAAACCATTCATTGGAGCAAGGTAACAACATCTATTTACAACCTCATTTTAGGAAAACTCTACTGCGACCATTATGGTACAATGCGCCTAGAGGGGAACAGTAGCTATGTATGTAAGATCAAATTCAAGGAGCAGTCAATCATTGATAGGAATCCTCACCAGATTCATGGCGTAGTGGAGGATAAGAAAAGTAAAACAGTGGCAACTCTAATTGGGAAGTGGGATGAGAATTTGCACTGCGTAATTGGAGGGGGTTTTGGGAAAGGAAAAGGGTCCGATGAGTCATCAAAACCACATCTTCTGTGGAAGAAGAACCCGTCACCAGAGCACCCGACAAGATATAACTTCACACAATTTGCTATTACACTCAATGAAATCACACCTGAACTAAAGGAGAAGTTGCCACCGACGGATTCAAGGCTAAGACCTGATCAAAGGTGTTTGGAGAATGGACAGCATGAAATGGCCAATTCTGAAAAGTTGCGGCTGGAACAAAGACAGCGGCAGGCACGAAAGATGCAAGAAAAGGGTTGGAAACCAAGGTGGTTTGCTAAGGAAAAAGGCAGCATCTCTTACCGTTATATTGGAGGGTACTGGGAGAGTAGGGATAAGGGGAATTGGGAATCCTGTCCTGACATTTTTGGTCAATTCTCAACCGATACTGATGTTAACCCAACTCCATAA 2352 0.4762 MNSFRGSQNRNKHAPIPRQPRSTTDEKPMNPPAGPPALRFRSLSTCSHNRPSPSRVVQRSASARITRQHTTTRGEVMLSDVVGNGISGILHKWVNYGRGWRPRWFVLHDGVLSYYKIHGPDKLVLNQDVEDGSMVIGEESLRRINSHRHCPSRNRKPVSEIHLMVCSVRENSSDKRRFSVCTGTKKRLHLRAESKEDRAMWVDAMMAVKDMYPRLPNAEVLSPVASVAISTEKLRERLLEEGVSEATIGECEEIMKSEFSQLKKQMVALKHKHLLLIDTLRQLESEKVDLENTLIEDQRQSKDGADTHPLTQEKYSEGSGEDSSDENDRLDPSDDDDDAFFDTCEILSTGSDHLRSCHDSEQDESGPNEICDEKSPIGSVGFNYPHIKRRKKLPDPVEKESSISLWSIIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDVEYSYLLDQAYEWGKMGDGLKRMIHVAGFAASAYASTKGRSCKPFNPLLGETYEADYPDKGIRFISEKVSHHPMIVACHCEGRGWKFWGDVNLKSKFWGRSIQLDPIGVLTVEFDDGETIHWSKVTTSIYNLILGKLYCDHYGTMRLEGNSSYVCKIKFKEQSIIDRNPHQIHGVVEDKKSKTVATLIGKWDENLHCVIGGGFGKGKGSDESSKPHLLWKKNPSPEHPTRYNFTQFAITLNEITPELKEKLPPTDSRLRPDQRCLENGQHEMANSEKLRLEQRQRQARKMQEKGWKPRWFAKEKGSISYRYIGGYWESRDKGNWESCPDIFGQFSTDTDVNPTP 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01859 783 MobiDBLite consensus disorder prediction 294 310 - -
Vimu10g01859 783 SUPERFAMILY Oxysterol-binding protein-like 399 772 IPR037239 -
Vimu10g01859 783 Gene3D - 701 765 - -
Vimu10g01859 783 MobiDBLite consensus disorder prediction 294 335 - -
Vimu10g01859 783 Pfam PH domain 86 206 IPR001849 -
Vimu10g01859 783 FunFam Oxysterol-binding protein-related protein 2A 701 772 - -
Vimu10g01859 783 SUPERFAMILY PH domain-like 86 217 - -
Vimu10g01859 783 Coils Coil 712 732 - -
Vimu10g01859 783 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 85 758 IPR000648 GO:0008289
Vimu10g01859 783 Pfam Oxysterol-binding protein 404 758 IPR000648 GO:0008289
Vimu10g01859 783 Gene3D - 84 212 IPR011993 -
Vimu10g01859 783 Gene3D - 490 670 - -
Vimu10g01859 783 Coils Coil 280 300 - -
Vimu10g01859 783 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g01859 783 MobiDBLite consensus disorder prediction 1 70 - -
Vimu10g01859 783 MobiDBLite consensus disorder prediction 352 375 - -
Vimu10g01859 783 MobiDBLite consensus disorder prediction 42 70 - -
Vimu10g01859 783 MobiDBLite consensus disorder prediction 352 370 - -
Vimu10g01859 783 ProSiteProfiles PH domain profile. 83 210 IPR001849 -
Vimu10g01859 783 SMART PH_update 84 212 IPR001849 -
Vimu10g01859 783 FunFam oxysterol-binding protein-related protein 1D isoform X1 490 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01859 Vimu-Chr10 26580265 26587221 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01859 K20456 - gmx:100807703 1274.23