Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01789 GACTGTCAATGGCGACAAAAGCTTTGTCTTTCGCTTTGTCCATCAACGACCTCACCAACTGCTTCTCCTCCAATCCGCCACCCGCCTCCGTGGCAGCTAAAGTTTCCGTCTTTACCGTCAGATGTTCTTCGGGTAGCCTCTCAATGGCTTTTGATTTTGGAGGGTATTGTTAATTTTCTATCCGTGGTTCAAATAAGTCGATGCTGTTGTATTACATATGACGTAGGTAGTGGAGAAAGACCTTGGAAAAACTCAGATGCTAGACTGGTTCTAGAAGATGGTTCAATTTGGAGAGCGAAATCGTTTGGTGCTTCAGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCACTGACAGGGTATCAGGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCTCATATTGGGAATACTGGCGTTAATTTTGATGATGAGGAATCGATGCAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGCATCAGTACCTCTAACTGGAGATGTGCAAAGGCTCTGGGTGAATACTTAGCTGAAAGGAATATCATGGGAATTTATGATGTTGATACTCGTGCAATCACACGCAGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAACAGATGAGCAACTGCTTCAGATGTCTAAGTCATGGGACATTGTTGGTGTTGATCTAATAAGTGGAGTATCATGCAAAAGTCCACACGAGTGGGTTGATAAAACAAAGCAACAATGGGAGTTTAGTTCCGGTAAAGTGGCAGGAGAGAATTTCCATGTACGTAATGCTGTGGTTGCTTATGATTTTGGAATCAAGCATAATATTCTTAGACGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATCCACATGGCCAGCATCAGAAACTTTGAAGATGAAACCAGATGGGGTTCTTTTTAGTAATGGCCCTGGAGATCCATCTGCTGTTCCGTATGCTGTTGAAACAGTGAAGAATATAATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGAGGTAAAACATTCAAGATGAAATTTGGTCACCACGGAGGAAATCATCCTGTTCGTAACCTTCAAACTGGCCATGTTGAAATTAGTGCTCAGAACCACAACTATGCTGTTGACCCTGCCACACTGCCTGAAGGAGTGAAGGTTACTCATATCAATCTCAATGATGGAAGCTGTGCCGGTCTTGCTTTCCCTGCACAACAACTTATGTCTCTTCAATACCACCCTGAAGCATCCCCCGGACCTCATGATTCTGACTACGCTTTTAAGGAGTTTATAGAGCTAATGAAGCAAGGAAAAAACAGAACAAAGGAAAGTCTACCCCAGTTATCTGCACTGCATAGCAGTTGA 1431 0.4319 DCQWRQKLCLSLCPSTTSPTASPPIRHPPPWQLKFPSLPSDVLRVASQWLLILEGIVNFLSVVQISRCCCITYDVGSGERPWKNSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESMQCFLAGLVIRSLSISTSNWRCAKALGEYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTDNSKTDEQLLQMSKSWDIVGVDLISGVSCKSPHEWVDKTKQQWEFSSGKVAGENFHVRNAVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLQTGHVEISAQNHNYAVDPATLPEGVKVTHINLNDGSCAGLAFPAQQLMSLQYHPEASPGPHDSDYAFKEFIELMKQGKNRTKESLPQLSALHSS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01789 476 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 89 213 IPR002474 -
Vimu10g01789 476 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 86 231 IPR036480 -
Vimu10g01789 476 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 363 380 - -
Vimu10g01789 476 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 277 291 - -
Vimu10g01789 476 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 346 362 - -
Vimu10g01789 476 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 388 399 - -
Vimu10g01789 476 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 316 330 - -
Vimu10g01789 476 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 274 462 - -
Vimu10g01789 476 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 87 458 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vimu10g01789 476 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 83 447 - -
Vimu10g01789 476 FunFam Carbamoyl-phosphate synthase small chain 84 233 - -
Vimu10g01789 476 Hamap Carbamoyl-phosphate synthase small chain [carA]. 85 460 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vimu10g01789 476 PRINTS Glutamine amidotransferase superfamily signature 346 357 - -
Vimu10g01789 476 PRINTS Glutamine amidotransferase superfamily signature 431 444 - -
Vimu10g01789 476 PRINTS Glutamine amidotransferase superfamily signature 319 328 - -
Vimu10g01789 476 SUPERFAMILY Class I glutamine amidotransferase-like 236 458 IPR029062 -
Vimu10g01789 476 CDD GATase1_CPSase 277 453 IPR035686 -
Vimu10g01789 476 Gene3D - 234 460 IPR029062 -
Vimu10g01789 476 Gene3D - 85 233 IPR036480 -
Vimu10g01789 476 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 234 460 - -
Vimu10g01789 476 SMART CPSase_sm_chain_2 85 215 IPR002474 -
Vimu10g01789 476 PRINTS Anthranilate synthase component II signature 346 357 - -
Vimu10g01789 476 PRINTS Anthranilate synthase component II signature 431 444 - -
Vimu10g01789 476 PRINTS Anthranilate synthase component II signature 319 328 - -
Vimu10g01789 476 Pfam Glutamine amidotransferase class-I 280 454 IPR017926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01789 Vimu-Chr10 25239920 25242381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01789 K01956 - gmx:100788470 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01789 10 25239920 25242381 Vimu10g01789 10 25239920 25242381 ECH