Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01776 ATGACAAAATTCAGAATGCTGGGTCGACCCACTGATGCTGAGTCCTGGCCGGCTTTCCAGTTATATAGAACCATGGTTTCCCAGTTGGTGAAACACAAGCGTATCGAAACTACTGTGGCCAAGGCCAAAGAGATCAGACGACTTGCAGATAATATGGTTCAGCTTGGAAAGGAGCTTTTGGTTGATCTGTCTTCGAACATTACTTTAAAAACAGGGATGAATCTATTAAGGGGTTGGTTGATGCGTGAAATTTGGAAATACGATTATCTTTTGATTGTTCAATTTGTACTTGGTGTTCCAATTTGGCATATGGCAAGTTGGGGTTTGGGGAGGGAATTTTGTATGGTGAACTATGAAGGATCCCAATGTGCTGCAAGTCGTGCTGCTAGTTTTGTGCGAGGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAGGGATAGAGCTGGAGGATACACCAGATTGCTTCGAACTCGAATTCGAGTGGGTGATGCTGCACCAATGGCCTATATTGAGTTTATTGACAGAGAAAATGAGCTTAGGCAGCCAAAGCCACCAACTCCTCAGTCACCACAGAGAGCACCCCTAGACCCCTGGACACGTTCTCGTCTCAGTAGACAATTTGCTCCTCCTAAAGAGGGAAAATCTGGATCTGATTTGTGA 675 0.4489 MTKFRMLGRPTDAESWPAFQLYRTMVSQLVKHKRIETTVAKAKEIRRLADNMVQLGKELLVDLSSNITLKTGMNLLRGWLMREIWKYDYLLIVQFVLGVPIWHMASWGLGREFCMVNYEGSQCAASRAASFVRGDDVLHKLFTELAYRYRDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQPKPPTPQSPQRAPLDPWTRSRLSRQFAPPKEGKSGSDL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01776 224 Gene3D Ribosomal protein L17 2 178 IPR036373 GO:0003735|GO:0005840|GO:0006412
Vimu10g01776 224 Pfam Ribosomal protein L17 21 178 IPR000456 GO:0003735|GO:0005840|GO:0006412
Vimu10g01776 224 PANTHER RIBOSOMAL PROTEIN L17 2 200 IPR000456 GO:0003735|GO:0005840|GO:0006412
Vimu10g01776 224 SUPERFAMILY Prokaryotic ribosomal protein L17 13 58 IPR036373 GO:0003735|GO:0005840|GO:0006412
Vimu10g01776 224 MobiDBLite consensus disorder prediction 182 224 - -
Vimu10g01776 224 SUPERFAMILY Prokaryotic ribosomal protein L17 126 184 IPR036373 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01776 Vimu-Chr10 24868968 24870525 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01776 K02879 - nnu:104589257 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01776 10 24868968 24870525 Vimu10g01776 10 24868968 24870525 ECH